SymbC1.scaffold160.6 (160.6)

Aliases : 160.6

Description : Transcription regulator HTH, GntR; Periplasmic binding protein; ABC transporter-like; ABC transporter, permease; GntR, C-terminal [Interproscan].

Gene families : OG_01_0023668 (OrthoFinder) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: SymbC1.scaffold160.6
Cluster	HCCA: Cluster_1

Target	Alias	Description	ECC score	Gene Family Method	Actions
SymbC1.scaffold109.43	109.43	Transcription regulator HTH, GntR; GntR, C-terminal...	0.08	OrthoFinder

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003700	DNA-binding transcription factor activity	IEA	Interproscan
MF	GO:0005215	transporter activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	Interproscan
BP	GO:0006810	transport	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
CC	GO:0016021	integral component of membrane	IEA	Interproscan
MF	GO:0016887	ATPase	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
MF	GO:0022857	transmembrane transporter activity	IEA	Interproscan
MF	GO:0030554	adenyl nucleotide binding	None	Extended
CC	GO:0031224	intrinsic component of membrane	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0055085	transmembrane transport	IEA	Interproscan
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000150	DNA strand exchange activity	IEP	Enrichment
MF	GO:0000155	phosphorelay sensor kinase activity	IEP	Enrichment
MF	GO:0000287	magnesium ion binding	IEP	Enrichment
MF	GO:0003676	nucleic acid binding	IEP	Enrichment
MF	GO:0003677	DNA binding	IEP	Enrichment
MF	GO:0003824	catalytic activity	IEP	Enrichment
MF	GO:0003954	NADH dehydrogenase activity	IEP	Enrichment
MF	GO:0003955	NAD(P)H dehydrogenase (quinone) activity	IEP	Enrichment
MF	GO:0004061	arylformamidase activity	IEP	Enrichment
MF	GO:0004190	aspartic-type endopeptidase activity	IEP	Enrichment
MF	GO:0004427	inorganic diphosphatase activity	IEP	Enrichment
MF	GO:0004672	protein kinase activity	IEP	Enrichment
MF	GO:0004673	protein histidine kinase activity	IEP	Enrichment
MF	GO:0004814	arginine-tRNA ligase activity	IEP	Enrichment
MF	GO:0004834	tryptophan synthase activity	IEP	Enrichment
MF	GO:0005310	dicarboxylic acid transmembrane transporter activity	IEP	Enrichment
MF	GO:0005342	organic acid transmembrane transporter activity	IEP	Enrichment
MF	GO:0005539	glycosaminoglycan binding	IEP	Enrichment
CC	GO:0005840	ribosome	IEP	Enrichment
BP	GO:0006139	nucleobase-containing compound metabolic process	IEP	Enrichment
BP	GO:0006352	DNA-templated transcription, initiation	IEP	Enrichment
BP	GO:0006420	arginyl-tRNA aminoacylation	IEP	Enrichment
BP	GO:0006520	cellular amino acid metabolic process	IEP	Enrichment
BP	GO:0006568	tryptophan metabolic process	IEP	Enrichment
BP	GO:0006569	tryptophan catabolic process	IEP	Enrichment
BP	GO:0006576	cellular biogenic amine metabolic process	IEP	Enrichment
BP	GO:0006586	indolalkylamine metabolic process	IEP	Enrichment
BP	GO:0006605	protein targeting	IEP	Enrichment
BP	GO:0006612	protein targeting to membrane	IEP	Enrichment
BP	GO:0006613	cotranslational protein targeting to membrane	IEP	Enrichment
BP	GO:0006614	SRP-dependent cotranslational protein targeting to membrane	IEP	Enrichment
BP	GO:0006725	cellular aromatic compound metabolic process	IEP	Enrichment
BP	GO:0006783	heme biosynthetic process	IEP	Enrichment
BP	GO:0006784	heme A biosynthetic process	IEP	Enrichment
BP	GO:0006807	nitrogen compound metabolic process	IEP	Enrichment
BP	GO:0006835	dicarboxylic acid transport	IEP	Enrichment
BP	GO:0006857	oligopeptide transport	IEP	Enrichment
BP	GO:0006886	intracellular protein transport	IEP	Enrichment
BP	GO:0007165	signal transduction	IEP	Enrichment
BP	GO:0008104	protein localization	IEP	Enrichment
MF	GO:0008137	NADH dehydrogenase (ubiquinone) activity	IEP	Enrichment
BP	GO:0008152	metabolic process	IEP	Enrichment
MF	GO:0008641	ubiquitin-like modifier activating enzyme activity	IEP	Enrichment
MF	GO:0008963	phospho-N-acetylmuramoyl-pentapeptide-transferase activity	IEP	Enrichment
BP	GO:0009058	biosynthetic process	IEP	Enrichment
BP	GO:0009059	macromolecule biosynthetic process	IEP	Enrichment
BP	GO:0009063	cellular amino acid catabolic process	IEP	Enrichment
BP	GO:0009072	aromatic amino acid family metabolic process	IEP	Enrichment
BP	GO:0009074	aromatic amino acid family catabolic process	IEP	Enrichment
BP	GO:0009143	nucleoside triphosphate catabolic process	IEP	Enrichment
BP	GO:0009306	protein secretion	IEP	Enrichment
BP	GO:0009308	amine metabolic process	IEP	Enrichment
BP	GO:0009310	amine catabolic process	IEP	Enrichment
MF	GO:0009678	pyrophosphate hydrolysis-driven proton transmembrane transporter activity	IEP	Enrichment
BP	GO:0015031	protein transport	IEP	Enrichment
MF	GO:0015399	primary active transmembrane transporter activity	IEP	Enrichment
MF	GO:0015558	secondary active p-aminobenzoyl-glutamate transmembrane transporter activity	IEP	Enrichment
BP	GO:0015711	organic anion transport	IEP	Enrichment
BP	GO:0015814	p-aminobenzoyl-glutamate transport	IEP	Enrichment
BP	GO:0015833	peptide transport	IEP	Enrichment
BP	GO:0016070	RNA metabolic process	IEP	Enrichment
MF	GO:0016301	kinase activity	IEP	Enrichment
MF	GO:0016462	pyrophosphatase activity	IEP	Enrichment
MF	GO:0016491	oxidoreductase activity	IEP	Enrichment
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	IEP	Enrichment
MF	GO:0016775	phosphotransferase activity, nitrogenous group as acceptor	IEP	Enrichment
MF	GO:0016787	hydrolase activity	IEP	Enrichment
MF	GO:0016788	hydrolase activity, acting on ester bonds	IEP	Enrichment
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	IEP	Enrichment
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	IEP	Enrichment
MF	GO:0016877	ligase activity, forming carbon-sulfur bonds	IEP	Enrichment
MF	GO:0016987	sigma factor activity	IEP	Enrichment
BP	GO:0017013	protein flavinylation	IEP	Enrichment
BP	GO:0018130	heterocycle biosynthetic process	IEP	Enrichment
BP	GO:0019438	aromatic compound biosynthetic process	IEP	Enrichment
BP	GO:0019439	aromatic compound catabolic process	IEP	Enrichment
BP	GO:0019441	tryptophan catabolic process to kynurenine	IEP	Enrichment
BP	GO:0022402	cell cycle process	IEP	Enrichment
MF	GO:0022804	active transmembrane transporter activity	IEP	Enrichment
MF	GO:0022853	active ion transmembrane transporter activity	IEP	Enrichment
BP	GO:0032774	RNA biosynthetic process	IEP	Enrichment
BP	GO:0032940	secretion by cell	IEP	Enrichment
BP	GO:0033036	macromolecule localization	IEP	Enrichment
BP	GO:0034220	ion transmembrane transport	IEP	Enrichment
BP	GO:0034641	cellular nitrogen compound metabolic process	IEP	Enrichment
BP	GO:0034654	nucleobase-containing compound biosynthetic process	IEP	Enrichment
BP	GO:0035442	dipeptide transmembrane transport	IEP	Enrichment
BP	GO:0035592	establishment of protein localization to extracellular region	IEP	Enrichment
BP	GO:0035672	oligopeptide transmembrane transport	IEP	Enrichment
MF	GO:0035673	oligopeptide transmembrane transporter activity	IEP	Enrichment
BP	GO:0042168	heme metabolic process	IEP	Enrichment
BP	GO:0042180	cellular ketone metabolic process	IEP	Enrichment
BP	GO:0042402	cellular biogenic amine catabolic process	IEP	Enrichment
BP	GO:0042430	indole-containing compound metabolic process	IEP	Enrichment
BP	GO:0042436	indole-containing compound catabolic process	IEP	Enrichment
BP	GO:0042537	benzene-containing compound metabolic process	IEP	Enrichment
MF	GO:0042834	peptidoglycan binding	IEP	Enrichment
BP	GO:0042886	amide transport	IEP	Enrichment
MF	GO:0042887	amide transmembrane transporter activity	IEP	Enrichment
BP	GO:0042938	dipeptide transport	IEP	Enrichment
BP	GO:0043170	macromolecule metabolic process	IEP	Enrichment
CC	GO:0043228	non-membrane-bounded organelle	IEP	Enrichment
CC	GO:0043232	intracellular non-membrane-bounded organelle	IEP	Enrichment
BP	GO:0044106	cellular amine metabolic process	IEP	Enrichment
BP	GO:0044237	cellular metabolic process	IEP	Enrichment
BP	GO:0044238	primary metabolic process	IEP	Enrichment
BP	GO:0044248	cellular catabolic process	IEP	Enrichment
BP	GO:0044249	cellular biosynthetic process	IEP	Enrichment
BP	GO:0044270	cellular nitrogen compound catabolic process	IEP	Enrichment
BP	GO:0044271	cellular nitrogen compound biosynthetic process	IEP	Enrichment
BP	GO:0045047	protein targeting to ER	IEP	Enrichment
BP	GO:0045184	establishment of protein localization	IEP	Enrichment
BP	GO:0046160	heme a metabolic process	IEP	Enrichment
BP	GO:0046218	indolalkylamine catabolic process	IEP	Enrichment
BP	GO:0046483	heterocycle metabolic process	IEP	Enrichment
BP	GO:0046700	heterocycle catabolic process	IEP	Enrichment
BP	GO:0046903	secretion	IEP	Enrichment
BP	GO:0046907	intracellular transport	IEP	Enrichment
BP	GO:0046942	carboxylic acid transport	IEP	Enrichment
MF	GO:0046943	carboxylic acid transmembrane transporter activity	IEP	Enrichment
MF	GO:0048038	quinone binding	IEP	Enrichment
MF	GO:0050136	NADH dehydrogenase (quinone) activity	IEP	Enrichment
BP	GO:0051304	chromosome separation	IEP	Enrichment
BP	GO:0051641	cellular localization	IEP	Enrichment
BP	GO:0051649	establishment of localization in cell	IEP	Enrichment
BP	GO:0051668	localization within membrane	IEP	Enrichment
BP	GO:0055114	obsolete oxidation-reduction process	IEP	Enrichment
MF	GO:0070001	aspartic-type peptidase activity	IEP	Enrichment
BP	GO:0070189	kynurenine metabolic process	IEP	Enrichment
BP	GO:0070972	protein localization to endoplasmic reticulum	IEP	Enrichment
BP	GO:0071692	protein localization to extracellular region	IEP	Enrichment
BP	GO:0071702	organic substance transport	IEP	Enrichment
BP	GO:0071704	organic substance metabolic process	IEP	Enrichment
BP	GO:0071705	nitrogen compound transport	IEP	Enrichment
MF	GO:0071916	dipeptide transmembrane transporter activity	IEP	Enrichment
BP	GO:0072337	modified amino acid transport	IEP	Enrichment
MF	GO:0072349	modified amino acid transmembrane transporter activity	IEP	Enrichment
BP	GO:0072599	establishment of protein localization to endoplasmic reticulum	IEP	Enrichment
BP	GO:0072657	protein localization to membrane	IEP	Enrichment
BP	GO:0090150	establishment of protein localization to membrane	IEP	Enrichment
BP	GO:0090304	nucleic acid metabolic process	IEP	Enrichment
BP	GO:0098656	anion transmembrane transport	IEP	Enrichment
MF	GO:0140096	catalytic activity, acting on a protein	IEP	Enrichment
MF	GO:0140299	small molecule sensor activity	IEP	Enrichment
BP	GO:0140352	export from cell	IEP	Enrichment
BP	GO:1901292	nucleoside phosphate catabolic process	IEP	Enrichment
BP	GO:1901360	organic cyclic compound metabolic process	IEP	Enrichment
BP	GO:1901361	organic cyclic compound catabolic process	IEP	Enrichment
BP	GO:1901362	organic cyclic compound biosynthetic process	IEP	Enrichment
BP	GO:1901576	organic substance biosynthetic process	IEP	Enrichment
BP	GO:1901606	alpha-amino acid catabolic process	IEP	Enrichment
BP	GO:1902604	p-aminobenzoyl-glutamate transmembrane transport	IEP	Enrichment
BP	GO:1903825	organic acid transmembrane transport	IEP	Enrichment
MF	GO:1904680	peptide transmembrane transporter activity	IEP	Enrichment
BP	GO:1905039	carboxylic acid transmembrane transport	IEP	Enrichment

InterPro domains	Description	Start	Stop
IPR011711	GntR_C	105	226
IPR000524	Tscrpt_reg_HTH_GntR	15	76
IPR001851	ABC_transp_permease	525	761
IPR025997	SBP_2_dom	854	1091
IPR003439	ABC_transporter-like_ATP-bd	263	418

External Links

No external refs found!

SymbC1.scaffold160.6 (160.6)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation