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  5. SymbC1.scaffold16.259

SymbC1.scaffold16.259 (16.259)


Aliases : 16.259

Description : RND efflux pump, membrane fusion protein, barrel-sandwich domain; Acriflavin resistance protein; ABC transporter permease protein domain [Interproscan].


Gene families : OG_01_0005517 (OrthoFinder) Phylogenetic Tree(s): OG0005517_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: SymbC1.scaffold16.259
Cluster HCCA: Cluster_106


Type GO Term Name Evidence Source
CC GO:0016020 membrane IEA Interproscan
MF GO:0022857 transmembrane transporter activity IEA Interproscan
BP GO:0055085 transmembrane transport IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003697 single-stranded DNA binding IEP Enrichment
BP GO:0006553 lysine metabolic process IEP Enrichment
MF GO:0008839 4-hydroxy-tetrahydrodipicolinate reductase IEP Enrichment
BP GO:0009066 aspartate family amino acid metabolic process IEP Enrichment
BP GO:0009067 aspartate family amino acid biosynthetic process IEP Enrichment
BP GO:0009085 lysine biosynthetic process IEP Enrichment
BP GO:0009089 lysine biosynthetic process via diaminopimelate IEP Enrichment
MF GO:0016628 oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor IEP Enrichment
BP GO:0043648 dicarboxylic acid metabolic process IEP Enrichment
BP GO:0046451 diaminopimelate metabolic process IEP Enrichment
BP GO:1901607 alpha-amino acid biosynthetic process IEP Enrichment
InterPro domains Description Start Stop
IPR032317 HlyD_D23 2471 2743
IPR003838 ABC3_permease_dom 882 980
IPR001036 Acrflvin-R 2853 2969
IPR001036 Acrflvin-R 3241 3947
IPR001036 Acrflvin-R 3002 3217
No external refs found!