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  5. SymbC1.scaffold15.178

SymbC1.scaffold15.178 (15.178)


Aliases : 15.178

Description : Biotin/lipoyl attachment; Enoyl-CoA hydratase/isomerase; Transketolase-like, pyrimidine-binding domain; Thiolase, C-terminal; Thiolase, N-terminal; DNA-binding HTH domain, TetR-type; Dehydrogenase, E1 component; Peripheral subunit-binding domain [Interproscan].


Gene families : OG_01_0000228 (OrthoFinder) Phylogenetic Tree(s): OG0000228_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: SymbC1.scaffold15.178
Cluster HCCA: Cluster_202

Target Alias Description ECC score Gene Family Method Actions
Cz04g19010.t1 No alias Enoyl-CoA hydratase/isomerase [Interproscan]. 0.01 OrthoFinder
OT_01G06460.1 No alias Enoyl-CoA hydratase/isomerase [Interproscan]. 0.03 OrthoFinder
PTI_00G02690.1 No alias Enoyl-CoA hydratase/isomerase [Interproscan]. 0.02 OrthoFinder
Sro529_g161070.1 Contig4737.g35129 Naphthoyl-CoA synthase 0.01 OrthoFinder
SymbC1.scaffold2.2165 2.2165 Enoyl-CoA hydratase/isomerase [Interproscan]. 0.04 OrthoFinder
SymbC1.scaffold4.569 4.569 Enoyl-CoA hydratase/isomerase; DNA-binding HTH domain,... 0.03 OrthoFinder
SymbC1.scaffold984.2 984.2 Enoyl-CoA hydratase/isomerase [Interproscan]. 0.02 OrthoFinder
Vocar.0001s1161.1 32886059 Enoyl-CoA hydratase/isomerase [Interproscan]. 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0003824 catalytic activity IEA Interproscan
MF GO:0016624 oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor IEA Interproscan
MF GO:0016746 acyltransferase activity IEA Interproscan
MF GO:0016747 acyltransferase activity, transferring groups other than amino-acyl groups IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000096 sulfur amino acid metabolic process IEP Enrichment
BP GO:0000097 sulfur amino acid biosynthetic process IEP Enrichment
MF GO:0000150 DNA strand exchange activity IEP Enrichment
MF GO:0000156 phosphorelay response regulator activity IEP Enrichment
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Enrichment
MF GO:0003954 NADH dehydrogenase activity IEP Enrichment
MF GO:0003955 NAD(P)H dehydrogenase (quinone) activity IEP Enrichment
MF GO:0004418 hydroxymethylbilane synthase activity IEP Enrichment
MF GO:0004451 isocitrate lyase activity IEP Enrichment
MF GO:0004478 methionine adenosyltransferase activity IEP Enrichment
MF GO:0004748 ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor IEP Enrichment
MF GO:0004852 uroporphyrinogen-III synthase activity IEP Enrichment
MF GO:0005506 iron ion binding IEP Enrichment
BP GO:0005975 carbohydrate metabolic process IEP Enrichment
BP GO:0006012 galactose metabolic process IEP Enrichment
BP GO:0006082 organic acid metabolic process IEP Enrichment
BP GO:0006310 DNA recombination IEP Enrichment
BP GO:0006351 transcription, DNA-templated IEP Enrichment
BP GO:0006520 cellular amino acid metabolic process IEP Enrichment
BP GO:0006553 lysine metabolic process IEP Enrichment
BP GO:0006556 S-adenosylmethionine biosynthetic process IEP Enrichment
BP GO:0006743 ubiquinone metabolic process IEP Enrichment
BP GO:0006744 ubiquinone biosynthetic process IEP Enrichment
BP GO:0006790 sulfur compound metabolic process IEP Enrichment
BP GO:0006807 nitrogen compound metabolic process IEP Enrichment
BP GO:0006879 cellular iron ion homeostasis IEP Enrichment
BP GO:0007155 cell adhesion IEP Enrichment
BP GO:0007160 cell-matrix adhesion IEP Enrichment
MF GO:0008108 UDP-glucose:hexose-1-phosphate uridylyltransferase activity IEP Enrichment
MF GO:0008137 NADH dehydrogenase (ubiquinone) activity IEP Enrichment
BP GO:0008150 biological_process IEP Enrichment
BP GO:0008152 metabolic process IEP Enrichment
MF GO:0008172 S-methyltransferase activity IEP Enrichment
MF GO:0008410 CoA-transferase activity IEP Enrichment
MF GO:0008484 sulfuric ester hydrolase activity IEP Enrichment
MF GO:0008685 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity IEP Enrichment
MF GO:0008705 methionine synthase activity IEP Enrichment
MF GO:0008837 diaminopimelate epimerase activity IEP Enrichment
MF GO:0008883 glutamyl-tRNA reductase activity IEP Enrichment
MF GO:0008984 protein-glutamate methylesterase activity IEP Enrichment
MF GO:0009055 electron transfer activity IEP Enrichment
BP GO:0009058 biosynthetic process IEP Enrichment
BP GO:0009066 aspartate family amino acid metabolic process IEP Enrichment
BP GO:0009067 aspartate family amino acid biosynthetic process IEP Enrichment
BP GO:0009085 lysine biosynthetic process IEP Enrichment
BP GO:0009086 methionine biosynthetic process IEP Enrichment
BP GO:0009089 lysine biosynthetic process via diaminopimelate IEP Enrichment
BP GO:0009262 deoxyribonucleotide metabolic process IEP Enrichment
BP GO:0009263 deoxyribonucleotide biosynthetic process IEP Enrichment
BP GO:0009890 negative regulation of biosynthetic process IEP Enrichment
BP GO:0009987 cellular process IEP Enrichment
BP GO:0010558 negative regulation of macromolecule biosynthetic process IEP Enrichment
MF GO:0015144 carbohydrate transmembrane transporter activity IEP Enrichment
MF GO:0015159 polysaccharide transmembrane transporter activity IEP Enrichment
MF GO:0015399 primary active transmembrane transporter activity IEP Enrichment
BP GO:0015774 polysaccharide transport IEP Enrichment
CC GO:0015934 large ribosomal subunit IEP Enrichment
MF GO:0016597 amino acid binding IEP Enrichment
MF GO:0016728 oxidoreductase activity, acting on CH or CH2 groups, disulfide as acceptor IEP Enrichment
MF GO:0016743 carboxyl- or carbamoyltransferase activity IEP Enrichment
MF GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups IEP Enrichment
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP Enrichment
MF GO:0016779 nucleotidyltransferase activity IEP Enrichment
MF GO:0016782 transferase activity, transferring sulphur-containing groups IEP Enrichment
MF GO:0016833 oxo-acid-lyase activity IEP Enrichment
MF GO:0016849 phosphorus-oxygen lyase activity IEP Enrichment
MF GO:0016855 racemase and epimerase activity, acting on amino acids and derivatives IEP Enrichment
BP GO:0018130 heterocycle biosynthetic process IEP Enrichment
BP GO:0019438 aromatic compound biosynthetic process IEP Enrichment
BP GO:0019752 carboxylic acid metabolic process IEP Enrichment
MF GO:0020037 heme binding IEP Enrichment
BP GO:0022610 biological adhesion IEP Enrichment
CC GO:0030312 external encapsulating structure IEP Enrichment
CC GO:0031012 extracellular matrix IEP Enrichment
BP GO:0031324 negative regulation of cellular metabolic process IEP Enrichment
BP GO:0031327 negative regulation of cellular biosynthetic process IEP Enrichment
BP GO:0031589 cell-substrate adhesion IEP Enrichment
BP GO:0032324 molybdopterin cofactor biosynthetic process IEP Enrichment
MF GO:0034062 5'-3' RNA polymerase activity IEP Enrichment
BP GO:0034645 cellular macromolecule biosynthetic process IEP Enrichment
MF GO:0036094 small molecule binding IEP Enrichment
MF GO:0036361 racemase activity, acting on amino acids and derivatives IEP Enrichment
MF GO:0042084 5-methyltetrahydrofolate-dependent methyltransferase activity IEP Enrichment
BP GO:0042180 cellular ketone metabolic process IEP Enrichment
BP GO:0042181 ketone biosynthetic process IEP Enrichment
MF GO:0043167 ion binding IEP Enrichment
MF GO:0043169 cation binding IEP Enrichment
MF GO:0043177 organic acid binding IEP Enrichment
CC GO:0043190 ATP-binding cassette (ABC) transporter complex IEP Enrichment
BP GO:0043436 oxoacid metabolic process IEP Enrichment
BP GO:0044237 cellular metabolic process IEP Enrichment
BP GO:0044238 primary metabolic process IEP Enrichment
BP GO:0044249 cellular biosynthetic process IEP Enrichment
BP GO:0044272 sulfur compound biosynthetic process IEP Enrichment
BP GO:0044281 small molecule metabolic process IEP Enrichment
CC GO:0044391 ribosomal subunit IEP Enrichment
BP GO:0045892 negative regulation of transcription, DNA-templated IEP Enrichment
BP GO:0045934 negative regulation of nucleobase-containing compound metabolic process IEP Enrichment
BP GO:0046451 diaminopimelate metabolic process IEP Enrichment
BP GO:0046483 heterocycle metabolic process IEP Enrichment
BP GO:0046500 S-adenosylmethionine metabolic process IEP Enrichment
MF GO:0046872 metal ion binding IEP Enrichment
MF GO:0046906 tetrapyrrole binding IEP Enrichment
MF GO:0046914 transition metal ion binding IEP Enrichment
MF GO:0046983 protein dimerization activity IEP Enrichment
MF GO:0047661 amino-acid racemase activity IEP Enrichment
MF GO:0048038 quinone binding IEP Enrichment
MF GO:0050136 NADH dehydrogenase (quinone) activity IEP Enrichment
BP GO:0051172 negative regulation of nitrogen compound metabolic process IEP Enrichment
BP GO:0051253 negative regulation of RNA metabolic process IEP Enrichment
MF GO:0051536 iron-sulfur cluster binding IEP Enrichment
MF GO:0051540 metal cluster binding IEP Enrichment
MF GO:0051723 protein methylesterase activity IEP Enrichment
BP GO:0051775 response to redox state IEP Enrichment
BP GO:0055072 iron ion homeostasis IEP Enrichment
BP GO:0055114 obsolete oxidation-reduction process IEP Enrichment
MF GO:0060089 molecular transducer activity IEP Enrichment
MF GO:0061731 ribonucleoside-diphosphate reductase activity IEP Enrichment
MF GO:0070569 uridylyltransferase activity IEP Enrichment
BP GO:0071704 organic substance metabolic process IEP Enrichment
BP GO:0097659 nucleic acid-templated transcription IEP Enrichment
MF GO:0097747 RNA polymerase activity IEP Enrichment
CC GO:0098533 ATPase dependent transmembrane transport complex IEP Enrichment
CC GO:0098797 plasma membrane protein complex IEP Enrichment
BP GO:1901362 organic cyclic compound biosynthetic process IEP Enrichment
BP GO:1901566 organonitrogen compound biosynthetic process IEP Enrichment
BP GO:1901576 organic substance biosynthetic process IEP Enrichment
BP GO:1901605 alpha-amino acid metabolic process IEP Enrichment
BP GO:1901607 alpha-amino acid biosynthetic process IEP Enrichment
BP GO:1901661 quinone metabolic process IEP Enrichment
BP GO:1901663 quinone biosynthetic process IEP Enrichment
CC GO:1902495 transmembrane transporter complex IEP Enrichment
BP GO:1902679 negative regulation of RNA biosynthetic process IEP Enrichment
BP GO:1903507 negative regulation of nucleic acid-templated transcription IEP Enrichment
CC GO:1904949 ATPase complex IEP Enrichment
CC GO:1990351 transporter complex IEP Enrichment
BP GO:2000113 negative regulation of cellular macromolecule biosynthetic process IEP Enrichment
InterPro domains Description Start Stop
IPR004167 PSBD 1333 1368
IPR020616 Thiolase_N 1 181
IPR000089 Biotin_lipoyl 1211 1276
IPR001753 Enoyl-CoA_hydra/iso 977 1200
IPR001017 DH_E1 380 666
IPR001647 HTH_TetR 1790 1836
IPR005475 Transketolase-like_Pyr-bd 684 858
IPR020617 Thiolase_C 254 351
No external refs found!