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  5. SymbC1.scaffold1485.2

SymbC1.scaffold1485.2 (1485.2)


Aliases : 1485.2

Description : MCM OB domain; MCM, AAA-lid domain; MCM domain [Interproscan].


Gene families : OG_01_0003371 (OrthoFinder) Phylogenetic Tree(s): OG0003371_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: SymbC1.scaffold1485.2
Cluster HCCA: Cluster_116

Target Alias Description ECC score Gene Family Method Actions
Dusal.0654s00001.1 33186758 MCM domain; MCM OB domain; MCM, AAA-lid domain [Interproscan]. 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
BP GO:0006270 DNA replication initiation IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000012 single strand break repair IEP Enrichment
BP GO:0000154 rRNA modification IEP Enrichment
BP GO:0001510 RNA methylation IEP Enrichment
MF GO:0003857 3-hydroxyacyl-CoA dehydrogenase activity IEP Enrichment
MF GO:0003989 acetyl-CoA carboxylase activity IEP Enrichment
MF GO:0004748 ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor IEP Enrichment
MF GO:0004827 proline-tRNA ligase activity IEP Enrichment
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP Enrichment
BP GO:0006433 prolyl-tRNA aminoacylation IEP Enrichment
BP GO:0006631 fatty acid metabolic process IEP Enrichment
BP GO:0006633 fatty acid biosynthetic process IEP Enrichment
MF GO:0008649 rRNA methyltransferase activity IEP Enrichment
MF GO:0016421 CoA carboxylase activity IEP Enrichment
CC GO:0016459 myosin complex IEP Enrichment
MF GO:0016728 oxidoreductase activity, acting on CH or CH2 groups, disulfide as acceptor IEP Enrichment
MF GO:0016885 ligase activity, forming carbon-carbon bonds IEP Enrichment
MF GO:0017111 nucleoside-triphosphatase activity IEP Enrichment
BP GO:0031167 rRNA methylation IEP Enrichment
MF GO:0031369 translation initiation factor binding IEP Enrichment
MF GO:0061731 ribonucleoside-diphosphate reductase activity IEP Enrichment
BP GO:0070475 rRNA base methylation IEP Enrichment
MF GO:0140102 catalytic activity, acting on a rRNA IEP Enrichment
InterPro domains Description Start Stop
IPR033762 MCM_OB 115 248
IPR001208 MCM_dom 285 505
IPR041562 MCM_lid 560 595
No external refs found!