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  5. SymbC1.scaffold13535.3

SymbC1.scaffold13535.3 (13535.3)


Aliases : 13535.3

Description : PDZ domain; PDZ domain 6; DXP reductoisomerase C-terminal domain; Peptidase M50 [Interproscan].


Gene families : OG_01_0001587 (OrthoFinder) Phylogenetic Tree(s): OG0001587_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: SymbC1.scaffold13535.3
Cluster HCCA: Cluster_4

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000241.74 tig00000241_g20936.t1 Secondary metabolism.terpenoids.methylerythritol... 0.01 OrthoFinder
SymbC1.scaffold21.235 21.235 1-deoxy-D-xylulose 5-phosphate reductoisomerase,... 0.03 OrthoFinder
SymbC1.scaffold9.541 9.541 1-deoxy-D-xylulose 5-phosphate reductoisomerase,... 0.03 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0004222 metalloendopeptidase activity IEA Interproscan
MF GO:0005515 protein binding IEA Interproscan
BP GO:0006508 proteolysis IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003855 3-dehydroquinate dehydratase activity IEP Enrichment
BP GO:0009116 nucleoside metabolic process IEP Enrichment
MF GO:0010181 FMN binding IEP Enrichment
BP GO:1901657 glycosyl compound metabolic process IEP Enrichment
InterPro domains Description Start Stop
IPR026877 DXPR_C 47 107
IPR041489 PDZ_6 374 429
IPR041489 PDZ_6 203 238
IPR001478 PDZ 299 357
IPR008915 Peptidase_M50 150 706
No external refs found!