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  5. SymbC1.scaffold12679.2

SymbC1.scaffold12679.2 (12679.2)


Aliases : 12679.2

Description : Reverse transcriptase, RNA-dependent DNA polymerase [Interproscan].


Gene families : OG_01_0000058 (OrthoFinder) Phylogenetic Tree(s): OG0000058_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: SymbC1.scaffold12679.2
Cluster HCCA: Cluster_52

Target Alias Description ECC score Gene Family Method Actions
SymbC1.scaffold1030.5 1030.5 Zinc finger, CCHC-type; Reverse transcriptase,... 0.04 OrthoFinder
SymbC1.scaffold10380.1 10380.1 Integrase, catalytic core [Interproscan]. 0.04 OrthoFinder
SymbC1.scaffold12679.1 12679.1 Zinc finger, CCHC-type [Interproscan]. 0.03 OrthoFinder
SymbC1.scaffold1555.1 1555.1 Zinc finger, CCHC-type [Interproscan]. 0.06 OrthoFinder
SymbC1.scaffold1771.4 1771.4 Zinc finger, CCHC-type [Interproscan]. 0.05 OrthoFinder
SymbC1.scaffold1947.9 1947.9 Hypothetical protein 0.05 OrthoFinder
SymbC1.scaffold2072.2 2072.2 Zinc finger, CCHC-type [Interproscan]. 0.03 OrthoFinder
SymbC1.scaffold277.5 277.5 Zinc finger, CCHC-type [Interproscan]. 0.04 OrthoFinder
SymbC1.scaffold280.3 280.3 Reverse transcriptase, RNA-dependent DNA polymerase... 0.03 OrthoFinder
SymbC1.scaffold301.14 301.14 Hypothetical protein 0.04 OrthoFinder
SymbC1.scaffold3297.5 3297.5 Zinc finger, CCHC-type [Interproscan]. 0.06 OrthoFinder
SymbC1.scaffold3641.3 3641.3 Hypothetical protein 0.03 OrthoFinder
SymbC1.scaffold372.4 372.4 Hypothetical protein 0.03 OrthoFinder
SymbC1.scaffold3876.2 3876.2 Zinc finger, CCHC-type [Interproscan]. 0.08 OrthoFinder
SymbC1.scaffold550.3 550.3 Zinc finger, CCHC-type [Interproscan]. 0.04 OrthoFinder
SymbC1.scaffold6253.2 6253.2 Zinc finger, CCHC-type [Interproscan]. 0.06 OrthoFinder
SymbC1.scaffold692.1 692.1 Hypothetical protein 0.03 OrthoFinder
SymbC1.scaffold6954.1 6954.1 Hypothetical protein 0.04 OrthoFinder
SymbC1.scaffold721.4 721.4 Hypothetical protein 0.07 OrthoFinder
SymbC1.scaffold7247.3 7247.3 Zinc finger, CCHC-type [Interproscan]. 0.03 OrthoFinder
SymbC1.scaffold7411.1 7411.1 Hypothetical protein 0.03 OrthoFinder
SymbC1.scaffold8765.4 8765.4 Hypothetical protein 0.06 OrthoFinder
SymbC1.scaffold9481.1 9481.1 Hypothetical protein 0.03 OrthoFinder
SymbC1.scaffold9803.2 9803.2 Zinc finger, CCHC-type [Interproscan]. 0.05 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003872 6-phosphofructokinase activity IEP Enrichment
MF GO:0003922 GMP synthase (glutamine-hydrolyzing) activity IEP Enrichment
MF GO:0005261 cation channel activity IEP Enrichment
MF GO:0005539 glycosaminoglycan binding IEP Enrichment
BP GO:0006163 purine nucleotide metabolic process IEP Enrichment
BP GO:0006164 purine nucleotide biosynthetic process IEP Enrichment
BP GO:0006177 GMP biosynthetic process IEP Enrichment
BP GO:0006753 nucleoside phosphate metabolic process IEP Enrichment
BP GO:0007154 cell communication IEP Enrichment
MF GO:0008443 phosphofructokinase activity IEP Enrichment
BP GO:0008614 pyridoxine metabolic process IEP Enrichment
BP GO:0008615 pyridoxine biosynthetic process IEP Enrichment
BP GO:0009117 nucleotide metabolic process IEP Enrichment
BP GO:0009123 nucleoside monophosphate metabolic process IEP Enrichment
BP GO:0009124 nucleoside monophosphate biosynthetic process IEP Enrichment
BP GO:0009126 purine nucleoside monophosphate metabolic process IEP Enrichment
BP GO:0009127 purine nucleoside monophosphate biosynthetic process IEP Enrichment
BP GO:0009150 purine ribonucleotide metabolic process IEP Enrichment
BP GO:0009152 purine ribonucleotide biosynthetic process IEP Enrichment
BP GO:0009156 ribonucleoside monophosphate biosynthetic process IEP Enrichment
BP GO:0009161 ribonucleoside monophosphate metabolic process IEP Enrichment
BP GO:0009165 nucleotide biosynthetic process IEP Enrichment
BP GO:0009167 purine ribonucleoside monophosphate metabolic process IEP Enrichment
BP GO:0009168 purine ribonucleoside monophosphate biosynthetic process IEP Enrichment
BP GO:0009259 ribonucleotide metabolic process IEP Enrichment
BP GO:0009260 ribonucleotide biosynthetic process IEP Enrichment
BP GO:0009890 negative regulation of biosynthetic process IEP Enrichment
BP GO:0010558 negative regulation of macromolecule biosynthetic process IEP Enrichment
MF GO:0015252 proton channel activity IEP Enrichment
MF GO:0016855 racemase and epimerase activity, acting on amino acids and derivatives IEP Enrichment
MF GO:0019200 carbohydrate kinase activity IEP Enrichment
BP GO:0019637 organophosphate metabolic process IEP Enrichment
BP GO:0019693 ribose phosphate metabolic process IEP Enrichment
BP GO:0031324 negative regulation of cellular metabolic process IEP Enrichment
BP GO:0031327 negative regulation of cellular biosynthetic process IEP Enrichment
CC GO:0033178 proton-transporting two-sector ATPase complex, catalytic domain IEP Enrichment
MF GO:0033856 pyridoxine 5'-phosphate synthase activity IEP Enrichment
MF GO:0036361 racemase activity, acting on amino acids and derivatives IEP Enrichment
BP GO:0042816 vitamin B6 metabolic process IEP Enrichment
BP GO:0042819 vitamin B6 biosynthetic process IEP Enrichment
MF GO:0042834 peptidoglycan binding IEP Enrichment
BP GO:0043647 inositol phosphate metabolic process IEP Enrichment
BP GO:0044281 small molecule metabolic process IEP Enrichment
CC GO:0045261 proton-transporting ATP synthase complex, catalytic core F(1) IEP Enrichment
BP GO:0045892 negative regulation of transcription, DNA-templated IEP Enrichment
BP GO:0045934 negative regulation of nucleobase-containing compound metabolic process IEP Enrichment
BP GO:0046034 ATP metabolic process IEP Enrichment
BP GO:0046037 GMP metabolic process IEP Enrichment
BP GO:0046390 ribose phosphate biosynthetic process IEP Enrichment
BP GO:0046838 phosphorylated carbohydrate dephosphorylation IEP Enrichment
BP GO:0046855 inositol phosphate dephosphorylation IEP Enrichment
MF GO:0046933 proton-transporting ATP synthase activity, rotational mechanism IEP Enrichment
BP GO:0048523 negative regulation of cellular process IEP Enrichment
BP GO:0051172 negative regulation of nitrogen compound metabolic process IEP Enrichment
BP GO:0051253 negative regulation of RNA metabolic process IEP Enrichment
BP GO:0055086 nucleobase-containing small molecule metabolic process IEP Enrichment
BP GO:0071545 inositol phosphate catabolic process IEP Enrichment
BP GO:0072521 purine-containing compound metabolic process IEP Enrichment
BP GO:0072522 purine-containing compound biosynthetic process IEP Enrichment
BP GO:1901135 carbohydrate derivative metabolic process IEP Enrichment
BP GO:1901137 carbohydrate derivative biosynthetic process IEP Enrichment
BP GO:1901293 nucleoside phosphate biosynthetic process IEP Enrichment
BP GO:1901615 organic hydroxy compound metabolic process IEP Enrichment
BP GO:1901617 organic hydroxy compound biosynthetic process IEP Enrichment
BP GO:1902679 negative regulation of RNA biosynthetic process IEP Enrichment
BP GO:1903507 negative regulation of nucleic acid-templated transcription IEP Enrichment
BP GO:2000113 negative regulation of cellular macromolecule biosynthetic process IEP Enrichment
InterPro domains Description Start Stop
IPR013103 RVT_2 497 662
No external refs found!