SymbC1.scaffold109.45 (109.45)

Aliases : 109.45

Description : Glycerol-1-phosphate dehydrogenase; ABC transporter-like; ABC transporter type 1, transmembrane domain MetI-like; Endoribonuclease L-PSP/chorismate mutase-like [Interproscan].

Gene families : OG_01_0000256 (OrthoFinder) Phylogenetic Tree(s): OG0000256_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type Description Actions
Neighborhood HRR: SymbC1.scaffold109.45
Cluster HCCA: Cluster_83

Target Alias Description ECC score Gene Family Method Actions
SymbC1.scaffold109.3 109.3 ABC transporter-like; ABC transporter type 1,... 0.02 OrthoFinder
SymbC1.scaffold109.44 109.44 Bacterial extracellular solute-binding protein [Interproscan]. 0.02 OrthoFinder
SymbC1.scaffold217.29 217.29 ABC-2 family transporter protein; HlyD family secretion... 0.03 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
CC GO:0016020 membrane IEA Interproscan
MF GO:0016887 ATPase IEA Interproscan
BP GO:0055085 transmembrane transport IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEP Enrichment
MF GO:0004222 metalloendopeptidase activity IEP Enrichment
MF GO:0004520 endodeoxyribonuclease activity IEP Enrichment
MF GO:0004536 deoxyribonuclease activity IEP Enrichment
BP GO:0005975 carbohydrate metabolic process IEP Enrichment
BP GO:0008152 metabolic process IEP Enrichment
MF GO:0008198 ferrous iron binding IEP Enrichment
MF GO:0008963 phospho-N-acetylmuramoyl-pentapeptide-transferase activity IEP Enrichment
MF GO:0016758 hexosyltransferase activity IEP Enrichment
MF GO:0016780 phosphotransferase activity, for other substituted phosphate groups IEP Enrichment
BP GO:0030258 lipid modification IEP Enrichment
BP GO:0030259 lipid glycosylation IEP Enrichment
BP GO:0044238 primary metabolic process IEP Enrichment
BP GO:0070085 glycosylation IEP Enrichment
InterPro domains Description Start Stop
IPR003439 ABC_transporter-like_ATP-bd 1034 1166
IPR000515 MetI-like 372 554
IPR000515 MetI-like 85 287
IPR013813 Endoribo_LPSP/chorism_mut-like 882 1024
IPR032837 G1PDH 607 798
IPR032837 G1PDH 1389 1581
No external refs found!