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  5. Cpa|evm.model.tig00001493.9

Cpa|evm.model.tig00001493.9 (tig00001493_g8984.t1)


Aliases : tig00001493_g8984.t1

No description available


Gene families : OG_01_0002321 (OrthoFinder) Phylogenetic Tree(s): OG0002321_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00001493.9
Cluster HCCA: Cluster_45

Target Alias Description ECC score Gene Family Method Actions
Cre17.g724850 30782603 WD-40 repeat-containing protein MSI2 OS=Arabidopsis thaliana 0.06 OrthoFinder
Cz06g32260.t1 No alias Histone-binding protein RBBP4, N-terminal [Interproscan]. 0.02 OrthoFinder
Cz06g32270.t1 No alias WD40 repeat [Interproscan]. 0.05 OrthoFinder
Dusal.1675s00001.1 33198115 Histone-binding protein RBBP4, N-terminal [Interproscan]. 0.02 OrthoFinder
EOD10636 No alias Histone-binding protein RBBP4, N-terminal; WD40 repeat... 0.07 OrthoFinder
EOD30618 No alias Histone-binding protein RBBP4, N-terminal; WD40 repeat... 0.01 OrthoFinder
OT_06G00690.1 No alias Histone-binding protein RBBP4, N-terminal; WD40 repeat... 0.04 OrthoFinder
PTI_15G02490.1 No alias Histone-binding protein RBBP4, N-terminal; WD40 repeat... 0.02 OrthoFinder
Sro109_g054490.2 No alias WD40 repeat; Histone-binding protein RBBP4, N-terminal... 0.1 OrthoFinder
TP01G02670.1 No alias WD40 repeat; Histone-binding protein RBBP4, N-terminal... 0.06 OrthoFinder
Transcript_contig_89506 89506 Histone-binding protein RBBP4, N-terminal; WD40 repeat... 0.07 OrthoFinder
Vocar.0001s1447.1 32885852 WD40 repeat; Histone-binding protein RBBP4, N-terminal... 0.05 OrthoFinder
XM_002500334.1 MICPUN_80233, 80233 Histone-binding protein RBBP4, N-terminal; WD40 repeat... 0.08 OrthoFinder
lcl|LHPG02000003.1_cds_PRW59588.1_6370 PRW59588 WD40 repeat 0.08 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8499516.1_8469 KAA8499516 Glutamate-rich WD repeat-containing protein 1 0.01 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000959 mitochondrial RNA metabolic process IEP Enrichment
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0003743 translation initiation factor activity IEP Enrichment
MF GO:0003824 catalytic activity IEP Enrichment
MF GO:0003849 3-deoxy-7-phosphoheptulonate synthase activity IEP Enrichment
MF GO:0004512 inositol-3-phosphate synthase activity IEP Enrichment
MF GO:0004749 ribose phosphate diphosphokinase activity IEP Enrichment
MF GO:0004809 tRNA (guanine-N2-)-methyltransferase activity IEP Enrichment
MF GO:0004812 aminoacyl-tRNA ligase activity IEP Enrichment
MF GO:0004814 arginine-tRNA ligase activity IEP Enrichment
CC GO:0005575 cellular_component IEP Enrichment
CC GO:0005634 nucleus IEP Enrichment
CC GO:0005730 nucleolus IEP Enrichment
CC GO:0005737 cytoplasm IEP Enrichment
CC GO:0005739 mitochondrion IEP Enrichment
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP Enrichment
BP GO:0006020 inositol metabolic process IEP Enrichment
BP GO:0006021 inositol biosynthetic process IEP Enrichment
BP GO:0006066 alcohol metabolic process IEP Enrichment
BP GO:0006082 organic acid metabolic process IEP Enrichment
BP GO:0006139 nucleobase-containing compound metabolic process IEP Enrichment
BP GO:0006396 RNA processing IEP Enrichment
BP GO:0006399 tRNA metabolic process IEP Enrichment
BP GO:0006420 arginyl-tRNA aminoacylation IEP Enrichment
BP GO:0006520 cellular amino acid metabolic process IEP Enrichment
BP GO:0006725 cellular aromatic compound metabolic process IEP Enrichment
MF GO:0008134 transcription factor binding IEP Enrichment
MF GO:0008135 translation factor activity, RNA binding IEP Enrichment
BP GO:0008152 metabolic process IEP Enrichment
MF GO:0008170 N-methyltransferase activity IEP Enrichment
MF GO:0008173 RNA methyltransferase activity IEP Enrichment
MF GO:0008175 tRNA methyltransferase activity IEP Enrichment
MF GO:0008531 riboflavin kinase activity IEP Enrichment
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP Enrichment
BP GO:0016070 RNA metabolic process IEP Enrichment
MF GO:0016423 tRNA (guanine) methyltransferase activity IEP Enrichment
MF GO:0016597 amino acid binding IEP Enrichment
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Enrichment
MF GO:0016743 carboxyl- or carbamoyltransferase activity IEP Enrichment
MF GO:0016763 pentosyltransferase activity IEP Enrichment
MF GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups IEP Enrichment
MF GO:0016778 diphosphotransferase activity IEP Enrichment
MF GO:0016872 intramolecular lyase activity IEP Enrichment
MF GO:0016874 ligase activity IEP Enrichment
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP Enrichment
MF GO:0016887 ATPase IEP Enrichment
BP GO:0019751 polyol metabolic process IEP Enrichment
BP GO:0019752 carboxylic acid metabolic process IEP Enrichment
CC GO:0030684 preribosome IEP Enrichment
CC GO:0032040 small-subunit processome IEP Enrichment
BP GO:0034641 cellular nitrogen compound metabolic process IEP Enrichment
BP GO:0034660 ncRNA metabolic process IEP Enrichment
MF GO:0043177 organic acid binding IEP Enrichment
CC GO:0043226 organelle IEP Enrichment
CC GO:0043227 membrane-bounded organelle IEP Enrichment
CC GO:0043229 intracellular organelle IEP Enrichment
CC GO:0043231 intracellular membrane-bounded organelle IEP Enrichment
BP GO:0043436 oxoacid metabolic process IEP Enrichment
BP GO:0044237 cellular metabolic process IEP Enrichment
MF GO:0045182 translation regulator activity IEP Enrichment
BP GO:0046165 alcohol biosynthetic process IEP Enrichment
BP GO:0046173 polyol biosynthetic process IEP Enrichment
BP GO:0046483 heterocycle metabolic process IEP Enrichment
MF GO:0090079 translation regulator activity, nucleic acid binding IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
MF GO:0097159 organic cyclic compound binding IEP Enrichment
CC GO:0110165 cellular anatomical entity IEP Enrichment
MF GO:0140098 catalytic activity, acting on RNA IEP Enrichment
MF GO:0140101 catalytic activity, acting on a tRNA IEP Enrichment
BP GO:1901360 organic cyclic compound metabolic process IEP Enrichment
MF GO:1901363 heterocyclic compound binding IEP Enrichment
BP GO:1901615 organic hydroxy compound metabolic process IEP Enrichment
BP GO:1901617 organic hydroxy compound biosynthetic process IEP Enrichment
CC GO:1990904 ribonucleoprotein complex IEP Enrichment
InterPro domains Description Start Stop
IPR001680 WD40_repeat 383 420
IPR001680 WD40_repeat 321 334
IPR022052 Histone-bd_RBBP4_N 96 163
No external refs found!