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  5. SymbC1.scaffold10380.1

SymbC1.scaffold10380.1 (10380.1)


Aliases : 10380.1

Description : Integrase, catalytic core [Interproscan].


Gene families : OG_01_0000058 (OrthoFinder) Phylogenetic Tree(s): OG0000058_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: SymbC1.scaffold10380.1
Cluster HCCA: Cluster_55

Target Alias Description ECC score Gene Family Method Actions
SymbC1.scaffold11335.1 11335.1 Hypothetical protein 0.03 OrthoFinder
SymbC1.scaffold1152.4 1152.4 Hypothetical protein 0.04 OrthoFinder
SymbC1.scaffold12679.1 12679.1 Zinc finger, CCHC-type [Interproscan]. 0.02 OrthoFinder
SymbC1.scaffold12679.2 12679.2 Reverse transcriptase, RNA-dependent DNA polymerase... 0.04 OrthoFinder
SymbC1.scaffold1555.1 1555.1 Zinc finger, CCHC-type [Interproscan]. 0.04 OrthoFinder
SymbC1.scaffold166.9 166.9 Zinc finger, CCHC-type [Interproscan]. 0.07 OrthoFinder
SymbC1.scaffold1697.5 1697.5 Hypothetical protein 0.04 OrthoFinder
SymbC1.scaffold1790.1 1790.1 Hypothetical protein 0.05 OrthoFinder
SymbC1.scaffold2028.3 2028.3 Integrase, catalytic core [Interproscan]. 0.04 OrthoFinder
SymbC1.scaffold2036.2 2036.2 Zinc finger, CCHC-type [Interproscan]. 0.02 OrthoFinder
SymbC1.scaffold2072.2 2072.2 Zinc finger, CCHC-type [Interproscan]. 0.02 OrthoFinder
SymbC1.scaffold2297.4 2297.4 Hypothetical protein 0.04 OrthoFinder
SymbC1.scaffold329.2 329.2 Reverse transcriptase, RNA-dependent DNA polymerase... 0.06 OrthoFinder
SymbC1.scaffold3297.5 3297.5 Zinc finger, CCHC-type [Interproscan]. 0.04 OrthoFinder
SymbC1.scaffold3612.1 3612.1 Zinc finger, CCHC-type [Interproscan]. 0.03 OrthoFinder
SymbC1.scaffold3641.3 3641.3 Hypothetical protein 0.03 OrthoFinder
SymbC1.scaffold3876.2 3876.2 Zinc finger, CCHC-type [Interproscan]. 0.03 OrthoFinder
SymbC1.scaffold4098.6 4098.6 Zinc finger, CCHC-type [Interproscan]. 0.04 OrthoFinder
SymbC1.scaffold4165.2 4165.2 Zinc finger, CCHC-type [Interproscan]. 0.03 OrthoFinder
SymbC1.scaffold5422.1 5422.1 Hypothetical protein 0.02 OrthoFinder
SymbC1.scaffold5583.1 5583.1 Hypothetical protein 0.05 OrthoFinder
SymbC1.scaffold6253.2 6253.2 Zinc finger, CCHC-type [Interproscan]. 0.05 OrthoFinder
SymbC1.scaffold6954.1 6954.1 Hypothetical protein 0.03 OrthoFinder
SymbC1.scaffold7099.2 7099.2 Hypothetical protein 0.04 OrthoFinder
SymbC1.scaffold7159.1 7159.1 Reverse transcriptase, RNA-dependent DNA polymerase... 0.05 OrthoFinder
SymbC1.scaffold720.6 720.6 Zinc finger, CCHC-type [Interproscan]. 0.07 OrthoFinder
SymbC1.scaffold721.4 721.4 Hypothetical protein 0.06 OrthoFinder
SymbC1.scaffold7569.1 7569.1 Reverse transcriptase, RNA-dependent DNA polymerase;... 0.05 OrthoFinder
SymbC1.scaffold8751.1 8751.1 Hypothetical protein 0.05 OrthoFinder
SymbC1.scaffold8765.4 8765.4 Hypothetical protein 0.06 OrthoFinder
SymbC1.scaffold9803.2 9803.2 Zinc finger, CCHC-type [Interproscan]. 0.05 OrthoFinder

Type GO Term Name Evidence Source
BP GO:0015074 DNA integration IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000155 phosphorelay sensor kinase activity IEP Enrichment
BP GO:0000160 phosphorelay signal transduction system IEP Enrichment
MF GO:0003918 DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity IEP Enrichment
MF GO:0004673 protein histidine kinase activity IEP Enrichment
MF GO:0016624 oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor IEP Enrichment
MF GO:0016775 phosphotransferase activity, nitrogenous group as acceptor IEP Enrichment
MF GO:0140299 small molecule sensor activity IEP Enrichment
InterPro domains Description Start Stop
IPR001584 Integrase_cat-core 959 1063
No external refs found!