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  5. SymbC1.scaffold10345.2

SymbC1.scaffold10345.2 (10345.2)


Aliases : 10345.2

Description : Pumilio RNA-binding repeat [Interproscan].


Gene families : OG_01_0000430 (OrthoFinder) Phylogenetic Tree(s): OG0000430_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: SymbC1.scaffold10345.2
Cluster HCCA: Cluster_80

Target Alias Description ECC score Gene Family Method Actions
SymbC1.scaffold1020.6 1020.6 Pumilio RNA-binding repeat [Interproscan]. 0.01 OrthoFinder
SymbC1.scaffold6228.2 6228.2 Pumilio RNA-binding repeat [Interproscan]. 0.03 OrthoFinder
SymbC1.scaffold7049.3 7049.3 Hypothetical protein 0.03 OrthoFinder
SymbC1.scaffold8225.1 8225.1 Pumilio RNA-binding repeat [Interproscan]. 0.03 OrthoFinder
lcl|BLLF01000415.1_cds_GFH11566.1_6043 HaLaN_07085, GFH11566 Puf protein 0.01 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004520 endodeoxyribonuclease activity IEP Enrichment
MF GO:0004531 deoxyribonuclease II activity IEP Enrichment
MF GO:0004536 deoxyribonuclease activity IEP Enrichment
MF GO:0004843 thiol-dependent deubiquitinase IEP Enrichment
CC GO:0005634 nucleus IEP Enrichment
CC GO:0005887 integral component of plasma membrane IEP Enrichment
BP GO:0006397 mRNA processing IEP Enrichment
BP GO:0006650 glycerophospholipid metabolic process IEP Enrichment
BP GO:0006753 nucleoside phosphate metabolic process IEP Enrichment
BP GO:0006811 ion transport IEP Enrichment
BP GO:0006812 cation transport IEP Enrichment
MF GO:0008242 omega peptidase activity IEP Enrichment
MF GO:0008324 cation transmembrane transporter activity IEP Enrichment
BP GO:0009117 nucleotide metabolic process IEP Enrichment
BP GO:0009165 nucleotide biosynthetic process IEP Enrichment
BP GO:0009262 deoxyribonucleotide metabolic process IEP Enrichment
BP GO:0009263 deoxyribonucleotide biosynthetic process IEP Enrichment
MF GO:0009678 pyrophosphate hydrolysis-driven proton transmembrane transporter activity IEP Enrichment
MF GO:0015075 ion transmembrane transporter activity IEP Enrichment
MF GO:0015078 proton transmembrane transporter activity IEP Enrichment
MF GO:0015099 nickel cation transmembrane transporter activity IEP Enrichment
MF GO:0015318 inorganic molecular entity transmembrane transporter activity IEP Enrichment
BP GO:0015675 nickel cation transport IEP Enrichment
MF GO:0016307 phosphatidylinositol phosphate kinase activity IEP Enrichment
MF GO:0016462 pyrophosphatase activity IEP Enrichment
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Enrichment
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Enrichment
MF GO:0016889 endodeoxyribonuclease activity, producing 3'-phosphomonoesters IEP Enrichment
MF GO:0016894 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 3'-phosphomonoesters IEP Enrichment
BP GO:0019637 organophosphate metabolic process IEP Enrichment
MF GO:0019783 ubiquitin-like protein-specific protease activity IEP Enrichment
MF GO:0022890 inorganic cation transmembrane transporter activity IEP Enrichment
MF GO:0030151 molybdenum ion binding IEP Enrichment
CC GO:0031226 intrinsic component of plasma membrane IEP Enrichment
BP GO:0034220 ion transmembrane transport IEP Enrichment
BP GO:0035444 nickel cation transmembrane transport IEP Enrichment
CC GO:0043227 membrane-bounded organelle IEP Enrichment
CC GO:0043231 intracellular membrane-bounded organelle IEP Enrichment
CC GO:0045263 proton-transporting ATP synthase complex, coupling factor F(o) IEP Enrichment
BP GO:0046488 phosphatidylinositol metabolic process IEP Enrichment
BP GO:0090407 organophosphate biosynthetic process IEP Enrichment
BP GO:0098655 cation transmembrane transport IEP Enrichment
BP GO:0098660 inorganic ion transmembrane transport IEP Enrichment
BP GO:0098662 inorganic cation transmembrane transport IEP Enrichment
MF GO:0101005 deubiquitinase activity IEP Enrichment
BP GO:1901137 carbohydrate derivative biosynthetic process IEP Enrichment
BP GO:1901293 nucleoside phosphate biosynthetic process IEP Enrichment
BP GO:1902600 proton transmembrane transport IEP Enrichment
InterPro domains Description Start Stop
IPR001313 Pumilio_RNA-bd_rpt 54 81
IPR001313 Pumilio_RNA-bd_rpt 19 52
No external refs found!