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  5. SymbC1.scaffold10331.2

SymbC1.scaffold10331.2 (10331.2)


Aliases : 10331.2

Description : ABC transporter-like; ABC transporter type 1, transmembrane domain [Interproscan].


Gene families : OG_01_0000036 (OrthoFinder) Phylogenetic Tree(s): OG0000036_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: SymbC1.scaffold10331.2
Cluster HCCA: Cluster_102

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00020961.3 tig00020961_g16623.t1 ABC transporter B family member 25 OS=Oryza sativa... 0.01 OrthoFinder
Cpa|evm.model.tig00021434.18 tig00021434_g21315.t1 ABC transporter B family member 14 OS=Arabidopsis thaliana 0.01 OrthoFinder
Cre02.g083354 30785555 Solute transport.primary active transport.ABC... 0.02 OrthoFinder
EOD26441 No alias Putative ABC transporter [Ensembl]. 0.02 OrthoFinder
Sro34_g021790.1 Contig4590.g34282 Lactococcin-G-processing and transport ATP-binding protein LagD 0.01 OrthoFinder
SymbC1.scaffold281.2 281.2 ABC transporter-like; ABC transporter type 1,... 0.03 OrthoFinder
XM_002505884.1 MICPUN_88240, 88240 ATP-binding cassette superfamily 0.02 OrthoFinder
XM_002508988.1 MICPUN_98162, 98162 ATP-binding cassette superfamily 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
CC GO:0016021 integral component of membrane IEA Interproscan
MF GO:0016887 ATPase IEA Interproscan
MF GO:0042626 ATPase-coupled transmembrane transporter activity IEA Interproscan
BP GO:0055085 transmembrane transport IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000012 single strand break repair IEP Enrichment
BP GO:0000154 rRNA modification IEP Enrichment
BP GO:0001510 RNA methylation IEP Enrichment
MF GO:0004332 fructose-bisphosphate aldolase activity IEP Enrichment
MF GO:0004827 proline-tRNA ligase activity IEP Enrichment
MF GO:0005543 phospholipid binding IEP Enrichment
BP GO:0006270 DNA replication initiation IEP Enrichment
BP GO:0006433 prolyl-tRNA aminoacylation IEP Enrichment
BP GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport IEP Enrichment
MF GO:0008289 lipid binding IEP Enrichment
MF GO:0008649 rRNA methyltransferase activity IEP Enrichment
BP GO:0016310 phosphorylation IEP Enrichment
CC GO:0030117 membrane coat IEP Enrichment
CC GO:0030120 vesicle coat IEP Enrichment
CC GO:0030127 COPII vesicle coat IEP Enrichment
BP GO:0031167 rRNA methylation IEP Enrichment
MF GO:0035091 phosphatidylinositol binding IEP Enrichment
BP GO:0048193 Golgi vesicle transport IEP Enrichment
BP GO:0070475 rRNA base methylation IEP Enrichment
MF GO:0140102 catalytic activity, acting on a rRNA IEP Enrichment
InterPro domains Description Start Stop
IPR003439 ABC_transporter-like_ATP-bd 920 1074
IPR003439 ABC_transporter-like_ATP-bd 282 430
IPR011527 ABC1_TM_dom 2 212
IPR011527 ABC1_TM_dom 605 851
No external refs found!