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  5. SymbC1.scaffold10261.1

SymbC1.scaffold10261.1 (10261.1)


Aliases : 10261.1

Description : Actin family [Interproscan].


Gene families : OG_01_0000106 (OrthoFinder) Phylogenetic Tree(s): OG0000106_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: SymbC1.scaffold10261.1
Cluster HCCA: Cluster_63

Target Alias Description ECC score Gene Family Method Actions
PTI_03G04390.1 No alias Actin family [Interproscan]. 0.02 OrthoFinder
Transcript_contig_55399 55399 Actin family [Interproscan]. 0.02 OrthoFinder
XM_003058779.1 MicpuC2_47282, 47282 Actin superfamily 0.02 OrthoFinder
lcl|BLLF01000050.1_cds_GFH06670.1_1147 HaLaN_01339, GFH06670 Actin family [Interproscan]. 0.01 OrthoFinder
lcl|LHPG02000003.1_cds_PRW59601.1_6691 PRW59601 Actin 0.01 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000796 condensin complex IEP Enrichment
MF GO:0003743 translation initiation factor activity IEP Enrichment
MF GO:0003924 GTPase activity IEP Enrichment
MF GO:0004356 glutamate-ammonia ligase activity IEP Enrichment
MF GO:0004451 isocitrate lyase activity IEP Enrichment
MF GO:0004748 ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor IEP Enrichment
MF GO:0005509 calcium ion binding IEP Enrichment
CC GO:0005783 endoplasmic reticulum IEP Enrichment
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP Enrichment
CC GO:0005875 microtubule associated complex IEP Enrichment
BP GO:0006298 mismatch repair IEP Enrichment
BP GO:0006323 DNA packaging IEP Enrichment
BP GO:0006772 thiamine metabolic process IEP Enrichment
BP GO:0007076 mitotic chromosome condensation IEP Enrichment
BP GO:0009228 thiamine biosynthetic process IEP Enrichment
MF GO:0016211 ammonia ligase activity IEP Enrichment
MF GO:0016462 pyrophosphatase activity IEP Enrichment
MF GO:0016725 oxidoreductase activity, acting on CH or CH2 groups IEP Enrichment
MF GO:0016728 oxidoreductase activity, acting on CH or CH2 groups, disulfide as acceptor IEP Enrichment
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Enrichment
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Enrichment
MF GO:0016833 oxo-acid-lyase activity IEP Enrichment
MF GO:0016880 acid-ammonia (or amide) ligase activity IEP Enrichment
MF GO:0017111 nucleoside-triphosphatase activity IEP Enrichment
BP GO:0022402 cell cycle process IEP Enrichment
BP GO:0030261 chromosome condensation IEP Enrichment
CC GO:0030286 dynein complex IEP Enrichment
MF GO:0030983 mismatched DNA binding IEP Enrichment
CC GO:0032991 protein-containing complex IEP Enrichment
BP GO:0042723 thiamine-containing compound metabolic process IEP Enrichment
BP GO:0042724 thiamine-containing compound biosynthetic process IEP Enrichment
MF GO:0042910 xenobiotic transmembrane transporter activity IEP Enrichment
CC GO:0044815 DNA packaging complex IEP Enrichment
MF GO:0061731 ribonucleoside-diphosphate reductase activity IEP Enrichment
BP GO:0072528 pyrimidine-containing compound biosynthetic process IEP Enrichment
BP GO:1903047 mitotic cell cycle process IEP Enrichment
InterPro domains Description Start Stop
IPR004000 Actin 3 324
No external refs found!