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  5. SymbC1.scaffold1.989

SymbC1.scaffold1.989 (1.989)


Aliases : 1.989

Description : Domain of unknown function DUF1588; Domain of unknown function DUF1553; Protein of unknown function DUF1501; Domain of unknown function DUF1587; Domain of unknown function DUF1592; ThuA-like domain; Domain of unknown function DUF1595; Domain of unknown function DUF1549; Protein of unknown function DUF1552; Domain of unknown function DUF1585; Cytochrome C, Planctomycete-type [Interproscan].


Gene families : OG_01_0000096 (OrthoFinder) Phylogenetic Tree(s): OG0000096_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: SymbC1.scaffold1.989
Cluster HCCA: Cluster_42

Target Alias Description ECC score Gene Family Method Actions
SymbC1.scaffold1.2384 1.2384 Protein of unknown function DUF1501; Transposase... 0.03 OrthoFinder
SymbC1.scaffold1.876 1.876 Domain of unknown function DUF1553;... 0.03 OrthoFinder
SymbC1.scaffold1.910 1.910 Domain of unknown function DUF1549; Protein of unknown... 0.03 OrthoFinder
SymbC1.scaffold14729.2 14729.2 Hypothetical protein 0.03 OrthoFinder
SymbC1.scaffold16.366 16.366 Domain of unknown function DUF1549; Domain of unknown... 0.03 OrthoFinder
SymbC1.scaffold17.122 17.122 Domain of unknown function DUF1549; Domain of unknown... 0.03 OrthoFinder
SymbC1.scaffold2.1175 2.1175 Alpha/beta hydrolase fold-3; Protein of unknown function... 0.03 OrthoFinder
SymbC1.scaffold2.1347 2.1347 Domain of unknown function DUF1553; Rad50/SbcC-type AAA... 0.03 OrthoFinder
SymbC1.scaffold2.1872 2.1872 Domain of unknown function DUF1549; Protein of unknown... 0.02 OrthoFinder
SymbC1.scaffold21255.1 21255.1 Domain of unknown function DUF1549; Cytochrome C,... 0.03 OrthoFinder
SymbC1.scaffold22185.2 22185.2 Protein of unknown function DUF1501 [Interproscan]. 0.03 OrthoFinder
SymbC1.scaffold22336.1 22336.1 Domain of unknown function DUF1549; Domain of unknown... 0.04 OrthoFinder
SymbC1.scaffold22759.1 22759.1 Domain of unknown function DUF1549; Protein of unknown... 0.03 OrthoFinder
SymbC1.scaffold27890.1 27890.1 Domain of unknown function DUF1553 [Interproscan]. 0.03 OrthoFinder
SymbC1.scaffold32.53 32.53 Protein of unknown function DUF1501; Domain of unknown... 0.03 OrthoFinder
SymbC1.scaffold37281.1 37281.1 Domain of unknown function DUF1549; Cytochrome C,... 0.03 OrthoFinder
SymbC1.scaffold38781.1 38781.1 Protein of unknown function DUF1501 [Interproscan]. 0.03 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000155 phosphorelay sensor kinase activity IEP Enrichment
MF GO:0000774 adenyl-nucleotide exchange factor activity IEP Enrichment
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003677 DNA binding IEP Enrichment
MF GO:0003857 3-hydroxyacyl-CoA dehydrogenase activity IEP Enrichment
MF GO:0003896 DNA primase activity IEP Enrichment
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Enrichment
MF GO:0004222 metalloendopeptidase activity IEP Enrichment
MF GO:0004673 protein histidine kinase activity IEP Enrichment
MF GO:0005261 cation channel activity IEP Enrichment
MF GO:0005283 amino acid:sodium symporter activity IEP Enrichment
MF GO:0005342 organic acid transmembrane transporter activity IEP Enrichment
MF GO:0005343 organic acid:sodium symporter activity IEP Enrichment
MF GO:0005416 amino acid:cation symporter activity IEP Enrichment
BP GO:0006355 regulation of transcription, DNA-templated IEP Enrichment
BP GO:0006812 cation transport IEP Enrichment
BP GO:0006814 sodium ion transport IEP Enrichment
BP GO:0006865 amino acid transport IEP Enrichment
MF GO:0008080 N-acetyltransferase activity IEP Enrichment
MF GO:0008237 metallopeptidase activity IEP Enrichment
MF GO:0008270 zinc ion binding IEP Enrichment
MF GO:0008324 cation transmembrane transporter activity IEP Enrichment
MF GO:0008514 organic anion transmembrane transporter activity IEP Enrichment
BP GO:0009889 regulation of biosynthetic process IEP Enrichment
BP GO:0010468 regulation of gene expression IEP Enrichment
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Enrichment
MF GO:0015078 proton transmembrane transporter activity IEP Enrichment
MF GO:0015081 sodium ion transmembrane transporter activity IEP Enrichment
MF GO:0015171 amino acid transmembrane transporter activity IEP Enrichment
MF GO:0015175 neutral amino acid transmembrane transporter activity IEP Enrichment
MF GO:0015252 proton channel activity IEP Enrichment
MF GO:0015291 secondary active transmembrane transporter activity IEP Enrichment
MF GO:0015294 solute:cation symporter activity IEP Enrichment
MF GO:0015370 solute:sodium symporter activity IEP Enrichment
MF GO:0015655 alanine:sodium symporter activity IEP Enrichment
BP GO:0015711 organic anion transport IEP Enrichment
BP GO:0015804 neutral amino acid transport IEP Enrichment
BP GO:0015849 organic acid transport IEP Enrichment
MF GO:0016209 antioxidant activity IEP Enrichment
MF GO:0016407 acetyltransferase activity IEP Enrichment
MF GO:0016410 N-acyltransferase activity IEP Enrichment
MF GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors IEP Enrichment
MF GO:0016746 acyltransferase activity IEP Enrichment
MF GO:0016747 acyltransferase activity, transferring groups other than amino-acyl groups IEP Enrichment
MF GO:0016775 phosphotransferase activity, nitrogenous group as acceptor IEP Enrichment
MF GO:0016779 nucleotidyltransferase activity IEP Enrichment
BP GO:0018130 heterocycle biosynthetic process IEP Enrichment
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Enrichment
BP GO:0019222 regulation of metabolic process IEP Enrichment
BP GO:0019438 aromatic compound biosynthetic process IEP Enrichment
CC GO:0019867 outer membrane IEP Enrichment
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Enrichment
MF GO:0022853 active ion transmembrane transporter activity IEP Enrichment
MF GO:0022858 alanine transmembrane transporter activity IEP Enrichment
MF GO:0022890 inorganic cation transmembrane transporter activity IEP Enrichment
MF GO:0031072 heat shock protein binding IEP Enrichment
BP GO:0031323 regulation of cellular metabolic process IEP Enrichment
BP GO:0031326 regulation of cellular biosynthetic process IEP Enrichment
BP GO:0032328 alanine transport IEP Enrichment
BP GO:0032774 RNA biosynthetic process IEP Enrichment
CC GO:0033178 proton-transporting two-sector ATPase complex, catalytic domain IEP Enrichment
MF GO:0034062 5'-3' RNA polymerase activity IEP Enrichment
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP Enrichment
BP GO:0042254 ribosome biogenesis IEP Enrichment
MF GO:0042802 identical protein binding IEP Enrichment
MF GO:0042803 protein homodimerization activity IEP Enrichment
BP GO:0044085 cellular component biogenesis IEP Enrichment
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Enrichment
CC GO:0045261 proton-transporting ATP synthase complex, catalytic core F(1) IEP Enrichment
CC GO:0045263 proton-transporting ATP synthase complex, coupling factor F(o) IEP Enrichment
BP GO:0046417 chorismate metabolic process IEP Enrichment
MF GO:0046933 proton-transporting ATP synthase activity, rotational mechanism IEP Enrichment
BP GO:0046942 carboxylic acid transport IEP Enrichment
MF GO:0046943 carboxylic acid transmembrane transporter activity IEP Enrichment
BP GO:0050789 regulation of biological process IEP Enrichment
BP GO:0050794 regulation of cellular process IEP Enrichment
MF GO:0051087 chaperone binding IEP Enrichment
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Enrichment
BP GO:0051252 regulation of RNA metabolic process IEP Enrichment
BP GO:0060255 regulation of macromolecule metabolic process IEP Enrichment
MF GO:0060589 nucleoside-triphosphatase regulator activity IEP Enrichment
MF GO:0060590 ATPase regulator activity IEP Enrichment
BP GO:0065007 biological regulation IEP Enrichment
BP GO:0071702 organic substance transport IEP Enrichment
BP GO:0071705 nitrogen compound transport IEP Enrichment
BP GO:0080090 regulation of primary metabolic process IEP Enrichment
MF GO:0097747 RNA polymerase activity IEP Enrichment
CC GO:0098796 membrane protein complex IEP Enrichment
MF GO:0140299 small molecule sensor activity IEP Enrichment
BP GO:1901362 organic cyclic compound biosynthetic process IEP Enrichment
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Enrichment
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Enrichment
BP GO:2001141 regulation of RNA biosynthetic process IEP Enrichment
InterPro domains Description Start Stop
IPR013039 DUF1588 614 710
IPR013043 DUF1595 402 462
IPR011447 DUF1552 837 1115
IPR022655 DUF1553 1897 2149
IPR011478 DUF1585 733 804
IPR029010 ThuA-like 2627 2843
IPR011429 Cyt_c_Planctomycete-type 1226 1280
IPR013042 DUF1592 467 595
IPR010869 DUF1501 2217 2627
IPR013036 DUF1587 136 199
IPR011444 DUF1549 1326 1532
No external refs found!