SymbC1.scaffold1.888 (1.888)

Aliases : 1.888

Description : Pyrrolo-quinoline quinone repeat; RNA polymerase sigma-70 ECF-like; FxsA cytoplasmic membrane protein; Nitrogen regulatory protein PII; Protein kinase domain [Interproscan].

Gene families : OG_01_0000231 (OrthoFinder) Phylogenetic Tree(s): OG0000231_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: SymbC1.scaffold1.888
Cluster	HCCA: Cluster_99

Target	Alias	Description	ECC score	Gene Family Method
SymbC1.scaffold1.1082	1.1082	von Willebrand factor, type A; Putative glutamine...	0.02	OrthoFinder
SymbC1.scaffold1.1641	1.1641	von Willebrand factor, type A; Beta-galactosidase...	0.02	OrthoFinder
SymbC1.scaffold16.194	16.194	ATPase, AAA-3; Domain of unknown function DUF58;...	0.02	OrthoFinder
SymbC1.scaffold2.846	2.846	Domain of unknown function DUF58; ATPase, AAA-3;...	0.03	OrthoFinder
SymbC1.scaffold22.285	22.285	Transposase IS3/IS911family; Integrase, catalytic core;...	0.01	OrthoFinder
SymbC1.scaffold23723.1	23723.1	Hypothetical protein	0.03	OrthoFinder
SymbC1.scaffold32647.1	32647.1	ATPase, AAA-3; ChlI/MoxR, AAA lid domain [Interproscan].	0.03	OrthoFinder
SymbC1.scaffold4.72	4.72	Protein of unknown function (DUF4381; von Willebrand...	0.01	OrthoFinder
SymbC1.scaffold9.218	9.218	ATPase, AAA-3; Domain of unknown function DUF58;...	0.02	OrthoFinder
SymbC1.scaffold9.402	9.402	Domain of unknown function DUF58 [Interproscan].	0.01	OrthoFinder
SymbC1.scaffold9.407	9.407	Beta-lactamase enzyme family; Domain of unknown function...	0.01	OrthoFinder

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004672	protein kinase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006464	cellular protein modification process	None	Extended
BP	GO:0006468	protein phosphorylation	IEA	Interproscan
BP	GO:0006793	phosphorus metabolic process	None	Extended
BP	GO:0006796	phosphate-containing compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006808	regulation of nitrogen utilization	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
CC	GO:0016020	membrane	IEA	Interproscan
MF	GO:0016301	kinase activity	None	Extended
BP	GO:0016310	phosphorylation	None	Extended
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	None	Extended
MF	GO:0016773	phosphotransferase activity, alcohol group as acceptor	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
MF	GO:0030234	enzyme regulator activity	IEA	Interproscan
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
BP	GO:0036211	protein modification process	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:0098772	molecular function regulator	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140096	catalytic activity, acting on a protein	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003735	structural constituent of ribosome	IEP	Enrichment
MF	GO:0005198	structural molecule activity	IEP	Enrichment
CC	GO:0005840	ribosome	IEP	Enrichment
BP	GO:0006412	translation	IEP	Enrichment
BP	GO:0006518	peptide metabolic process	IEP	Enrichment
BP	GO:0043043	peptide biosynthetic process	IEP	Enrichment
CC	GO:0043228	non-membrane-bounded organelle	IEP	Enrichment
CC	GO:0043229	intracellular organelle	IEP	Enrichment
CC	GO:0043232	intracellular non-membrane-bounded organelle	IEP	Enrichment
BP	GO:0043603	cellular amide metabolic process	IEP	Enrichment
BP	GO:0043604	amide biosynthetic process	IEP	Enrichment

InterPro domains	Description	Start	Stop
IPR000719	Prot_kinase_dom	2439	2698
IPR011517	RNA_pol_sigma70_ECF-like	2198	2338
IPR002187	N-reg_PII	2106	2192
IPR007313	FxsA	1954	2059
IPR002372	PQQ_repeat	1642	1892
IPR002372	PQQ_repeat	956	1116

External Links

No external refs found!

SymbC1.scaffold1.888 (1.888)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation