SymbC1.scaffold1.888 (1.888)

Aliases : 1.888

Description : Pyrrolo-quinoline quinone repeat; RNA polymerase sigma-70 ECF-like; FxsA cytoplasmic membrane protein; Nitrogen regulatory protein PII; Protein kinase domain [Interproscan].

Gene families : OG_01_0000231 (OrthoFinder) Phylogenetic Tree(s): OG0000231_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type Description Actions
Neighborhood HRR: SymbC1.scaffold1.888
Cluster HCCA: Cluster_99

Target Alias Description ECC score Gene Family Method Actions
SymbC1.scaffold1.1082 1.1082 von Willebrand factor, type A; Putative glutamine... 0.02 OrthoFinder
SymbC1.scaffold1.1641 1.1641 von Willebrand factor, type A; Beta-galactosidase... 0.02 OrthoFinder
SymbC1.scaffold16.194 16.194 ATPase, AAA-3; Domain of unknown function DUF58;... 0.02 OrthoFinder
SymbC1.scaffold2.846 2.846 Domain of unknown function DUF58; ATPase, AAA-3;... 0.03 OrthoFinder
SymbC1.scaffold22.285 22.285 Transposase IS3/IS911family; Integrase, catalytic core;... 0.01 OrthoFinder
SymbC1.scaffold23723.1 23723.1 Hypothetical protein 0.03 OrthoFinder
SymbC1.scaffold32647.1 32647.1 ATPase, AAA-3; ChlI/MoxR, AAA lid domain [Interproscan]. 0.03 OrthoFinder
SymbC1.scaffold4.72 4.72 Protein of unknown function (DUF4381; von Willebrand... 0.01 OrthoFinder
SymbC1.scaffold9.218 9.218 ATPase, AAA-3; Domain of unknown function DUF58;... 0.02 OrthoFinder
SymbC1.scaffold9.402 9.402 Domain of unknown function DUF58 [Interproscan]. 0.01 OrthoFinder
SymbC1.scaffold9.407 9.407 Beta-lactamase enzyme family; Domain of unknown function... 0.01 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0004672 protein kinase activity IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
BP GO:0006468 protein phosphorylation IEA Interproscan
BP GO:0006808 regulation of nitrogen utilization IEA Interproscan
CC GO:0016020 membrane IEA Interproscan
MF GO:0030234 enzyme regulator activity IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEP Enrichment
MF GO:0005198 structural molecule activity IEP Enrichment
CC GO:0005840 ribosome IEP Enrichment
BP GO:0006412 translation IEP Enrichment
BP GO:0006518 peptide metabolic process IEP Enrichment
BP GO:0043043 peptide biosynthetic process IEP Enrichment
CC GO:0043228 non-membrane-bounded organelle IEP Enrichment
CC GO:0043229 intracellular organelle IEP Enrichment
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Enrichment
BP GO:0043603 cellular amide metabolic process IEP Enrichment
BP GO:0043604 amide biosynthetic process IEP Enrichment
InterPro domains Description Start Stop
IPR000719 Prot_kinase_dom 2439 2698
IPR011517 RNA_pol_sigma70_ECF-like 2198 2338
IPR002187 N-reg_PII 2106 2192
IPR007313 FxsA 1954 2059
IPR002372 PQQ_repeat 1642 1892
IPR002372 PQQ_repeat 956 1116
No external refs found!