SymbC1.scaffold1.790 (1.790)

Aliases : 1.790

Description : Dockerin type I repeat; SD-repeat containing protein, B domain; Serine proteases, trypsin domain; Na-Ca exchanger/integrin-beta4; Calcineurin-like phosphoesterase domain, ApaH type [Interproscan].

Gene families : OG_01_0000055 (OrthoFinder) Phylogenetic Tree(s): OG0000055_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: SymbC1.scaffold1.790
Cluster	HCCA: Cluster_1

Type	GO Term	Name	Evidence	Source
BP	GO:0000272	polysaccharide catabolic process	IEA	Interproscan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004175	endopeptidase activity	None	Extended
MF	GO:0004252	serine-type endopeptidase activity	IEA	Interproscan
MF	GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds	IEA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0005975	carbohydrate metabolic process	None	Extended
BP	GO:0005976	polysaccharide metabolic process	None	Extended
BP	GO:0006508	proteolysis	IEA	Interproscan
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0007154	cell communication	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0008233	peptidase activity	None	Extended
MF	GO:0008236	serine-type peptidase activity	None	Extended
BP	GO:0009056	catabolic process	None	Extended
BP	GO:0009057	macromolecule catabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
CC	GO:0016021	integral component of membrane	IEA	Interproscan
BP	GO:0016052	carbohydrate catabolic process	None	Extended
MF	GO:0016787	hydrolase activity	IEA	Interproscan
MF	GO:0016798	hydrolase activity, acting on glycosyl bonds	None	Extended
MF	GO:0017171	serine hydrolase activity	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
CC	GO:0031224	intrinsic component of membrane	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140096	catalytic activity, acting on a protein	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901575	organic substance catabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000287	magnesium ion binding	IEP	Enrichment
MF	GO:0004427	inorganic diphosphatase activity	IEP	Enrichment
CC	GO:0005737	cytoplasm	IEP	Enrichment
MF	GO:0008270	zinc ion binding	IEP	Enrichment
MF	GO:0016462	pyrophosphatase activity	IEP	Enrichment
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	IEP	Enrichment
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	IEP	Enrichment
MF	GO:0046914	transition metal ion binding	IEP	Enrichment
MF	GO:0046983	protein dimerization activity	IEP	Enrichment

InterPro domains	Description	Start	Stop
IPR001254	Trypsin_dom	394	502
IPR001254	Trypsin_dom	755	977
IPR003644	Calx_beta	1038	1111
IPR002105	Dockerin_1_rpt	2147	2206
IPR033764	Sdr_B	645	743
IPR004843	Calcineurin-like_PHP_ApaH	3	234

External Links

No external refs found!

SymbC1.scaffold1.790 (1.790)

Expression Profile

Co-expression Networks

Functional Annotation