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  5. SymbC1.scaffold1.789

SymbC1.scaffold1.789 (1.789)


Aliases : 1.789

Description : HlyD family secretion protein; TRAP transporter solute receptor, TAXI family; FG-GAP repeat; Pectate lyase superfamily protein; Acriflavin resistance protein; Transcription regulator YbiH, C-terminal; DNA-binding HTH domain, TetR-type [Interproscan].


Gene families : OG_01_0005050 (OrthoFinder) Phylogenetic Tree(s): OG0005050_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: SymbC1.scaffold1.789
Cluster HCCA: Cluster_40


Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
CC GO:0016020 membrane IEA Interproscan
MF GO:0022857 transmembrane transporter activity IEA Interproscan
BP GO:0055085 transmembrane transport IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors IEP Enrichment
MF GO:0016987 sigma factor activity IEP Enrichment
InterPro domains Description Start Stop
IPR001647 HTH_TetR 1500 1545
IPR013517 FG-GAP 62 94
IPR001036 Acrflvin-R 2141 3186
IPR011852 TRAP_TAXI 1033 1328
IPR024535 Pectate_lyase_SF_prot 397 613
IPR015292 Tscrpt_reg_YbiH_C 1569 1668
No external refs found!