SymbC1.scaffold1.1137 (1.1137)


Aliases : 1.1137

Description : Protein of unknown function DUF2997; Serine-threonine/tyrosine-protein kinase, catalytic domain; Cadherin-like domain; WD40 repeat; RNA polymerase sigma factor 70, region 4 type 2; ATPase, AAA-type, core; Bacterial Ig domain [Interproscan].


Gene families : OG_01_0000458 (OrthoFinder) Phylogenetic Tree(s): OG0000458_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: SymbC1.scaffold1.1137
Cluster HCCA: Cluster_106

Target Alias Description ECC score Gene Family Method Actions
SymbC1.scaffold2.1721 2.1721 GNAT domain; Rieske [2Fe-2S] iron-sulphur domain;... 0.05 OrthoFinder
SymbC1.scaffold9.136 9.136 Glycosyltransferase RgtA/B/C/D-like [Interproscan]. 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0003700 DNA-binding transcription factor activity IEA Interproscan
MF GO:0004672 protein kinase activity IEA Interproscan
MF GO:0005515 protein binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
BP GO:0006352 DNA-templated transcription, initiation IEA Interproscan
BP GO:0006355 regulation of transcription, DNA-templated IEA Interproscan
BP GO:0006468 protein phosphorylation IEA Interproscan
MF GO:0016987 sigma factor activity IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0002161 aminoacyl-tRNA editing activity IEP Enrichment
MF GO:0004356 glutamate-ammonia ligase activity IEP Enrichment
MF GO:0004812 aminoacyl-tRNA ligase activity IEP Enrichment
BP GO:0006418 tRNA aminoacylation for protein translation IEP Enrichment
BP GO:0006520 cellular amino acid metabolic process IEP Enrichment
BP GO:0006541 glutamine metabolic process IEP Enrichment
BP GO:0006542 glutamine biosynthetic process IEP Enrichment
BP GO:0008360 regulation of cell shape IEP Enrichment
MF GO:0008484 sulfuric ester hydrolase activity IEP Enrichment
MF GO:0015002 obsolete heme-copper terminal oxidase activity IEP Enrichment
MF GO:0016211 ammonia ligase activity IEP Enrichment
BP GO:0016226 iron-sulfur cluster assembly IEP Enrichment
MF GO:0016874 ligase activity IEP Enrichment
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP Enrichment
MF GO:0016880 acid-ammonia (or amide) ligase activity IEP Enrichment
BP GO:0022603 regulation of anatomical structure morphogenesis IEP Enrichment
BP GO:0022604 regulation of cell morphogenesis IEP Enrichment
BP GO:0031163 metallo-sulfur cluster assembly IEP Enrichment
BP GO:0043038 amino acid activation IEP Enrichment
BP GO:0043039 tRNA aminoacylation IEP Enrichment
BP GO:0050793 regulation of developmental process IEP Enrichment
MF GO:0051920 peroxiredoxin activity IEP Enrichment
MF GO:0070403 NAD+ binding IEP Enrichment
InterPro domains Description Start Stop
IPR001680 WD40_repeat 1017 1053
IPR021375 DUF2997 7189 7235
IPR013249 RNA_pol_sigma70_r4_t2 178 229
IPR001245 Ser-Thr/Tyr_kinase_cat_dom 277 584
IPR041690 Cadherin_5 5756 5849
IPR041690 Cadherin_5 5851 5945
IPR003959 ATPase_AAA_core 7571 7699
No external refs found!