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  5. Cpa|evm.model.tig00001428.13

Cpa|evm.model.tig00001428.13 (tig00001428_g8733.t1)


Aliases : tig00001428_g8733.t1

Description : RNA processing.RNA decay.exosome complex.EXO9 core complex.MTR3/RRP41L component


Gene families : OG_01_0000382 (OrthoFinder) Phylogenetic Tree(s): OG0000382_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00001428.13
Cluster HCCA: Cluster_120

Target Alias Description ECC score Gene Family Method Actions
Cre17.g697624 30781907 RNA processing.RNA decay.exosome complex.EXO9 core... 0.02 OrthoFinder
Dusal.0855s00004.1 33188664 Exoribonuclease, phosphorolytic domain 2;... 0.01 OrthoFinder
Sro2148_g316530.1 Contig3130.g24839 Complex component RRP41 0.01 OrthoFinder
SymbC1.scaffold6695.2 6695.2 Exoribonuclease, phosphorolytic domain 1 [Interproscan]. 0.02 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0005634 nucleus IEP Enrichment
CC GO:0005732 sno(s)RNA-containing ribonucleoprotein complex IEP Enrichment
BP GO:0006364 rRNA processing IEP Enrichment
BP GO:0006766 vitamin metabolic process IEP Enrichment
BP GO:0006767 water-soluble vitamin metabolic process IEP Enrichment
BP GO:0006771 riboflavin metabolic process IEP Enrichment
BP GO:0009110 vitamin biosynthetic process IEP Enrichment
BP GO:0009231 riboflavin biosynthetic process IEP Enrichment
BP GO:0016072 rRNA metabolic process IEP Enrichment
BP GO:0030001 metal ion transport IEP Enrichment
BP GO:0042364 water-soluble vitamin biosynthetic process IEP Enrichment
BP GO:0042726 flavin-containing compound metabolic process IEP Enrichment
BP GO:0042727 flavin-containing compound biosynthetic process IEP Enrichment
CC GO:0043226 organelle IEP Enrichment
CC GO:0043227 membrane-bounded organelle IEP Enrichment
CC GO:0043229 intracellular organelle IEP Enrichment
CC GO:0043231 intracellular membrane-bounded organelle IEP Enrichment
CC GO:1990904 ribonucleoprotein complex IEP Enrichment
InterPro domains Description Start Stop
IPR015847 ExoRNase_PH_dom2 156 217
IPR001247 ExoRNase_PH_dom1 27 153
No external refs found!