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  5. Cpa|evm.model.tig00001416.8

Cpa|evm.model.tig00001416.8 (tig00001416_g8954.t1)


Aliases : tig00001416_g8954.t1

Description : Chaperone protein ClpC2, chloroplastic OS=Arabidopsis thaliana


Gene families : OG_01_0000068 (OrthoFinder) Phylogenetic Tree(s): OG0000068_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00001416.8
Cluster HCCA: Cluster_54

Target Alias Description ECC score Gene Family Method Actions
OT_07G02070.1 No alias Clp ATPase, C-terminal; ClpA/ClpB, AAA lid domain;... 0.01 OrthoFinder
Sro910_g219110.1 Contig1356.g12503 Protein ClpB 0.02 OrthoFinder
SymbC1.scaffold16.59 16.59 Clp ATPase, C-terminal; ATPase, AAA-type, core;... 0.01 OrthoFinder
SymbC1.scaffold685.19 685.19 Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA... 0.01 OrthoFinder
SymbC1.scaffold73.29 73.29 Clp, N-terminal; Adaptor protein ClpS, core; Clp ATPase,... 0.01 OrthoFinder
Transcript_contig_54694 54694 ClpA/ClpB, AAA lid domain; Clp ATPase, C-terminal;... 0.01 OrthoFinder
Vocar.0001s1202.1 32886168 ClpA/ClpB, AAA lid domain; ATPase, AAA-type, core; Clp,... 0.01 OrthoFinder
Vocar.0009s0332.1 32893470 ClpA/ClpB, AAA lid domain; ATPase, AAA-type, core; Clp,... 0.01 OrthoFinder
lcl|BLLF01000672.1_cds_GFH13966.1_8443 HaLaN_09936, GFH13966 ATPase, AAA-type, core [Interproscan]. 0.01 OrthoFinder
lcl|BLLF01001302.1_cds_GFH18442.1_12919 HaLaN_15252, GFH18442 ATPase, AAA-type, core; Clp ATPase, C-terminal [Interproscan]. 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003684 damaged DNA binding IEP Enrichment
MF GO:0003906 DNA-(apurinic or apyrimidinic site) endonuclease activity IEP Enrichment
MF GO:0004222 metalloendopeptidase activity IEP Enrichment
MF GO:0004497 monooxygenase activity IEP Enrichment
MF GO:0004499 N,N-dimethylaniline monooxygenase activity IEP Enrichment
MF GO:0005384 manganese ion transmembrane transporter activity IEP Enrichment
BP GO:0006284 base-excision repair IEP Enrichment
BP GO:0006289 nucleotide-excision repair IEP Enrichment
MF GO:0008237 metallopeptidase activity IEP Enrichment
MF GO:0010277 chlorophyllide a oxygenase [overall] activity IEP Enrichment
MF GO:0016491 oxidoreductase activity IEP Enrichment
MF GO:0016703 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of one atom of oxygen (internal monooxygenases or internal mixed function oxidases) IEP Enrichment
MF GO:0016709 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen IEP Enrichment
MF GO:0016799 hydrolase activity, hydrolyzing N-glycosyl compounds IEP Enrichment
MF GO:0042910 xenobiotic transmembrane transporter activity IEP Enrichment
MF GO:0046915 transition metal ion transmembrane transporter activity IEP Enrichment
MF GO:0050660 flavin adenine dinucleotide binding IEP Enrichment
MF GO:0050661 NADP binding IEP Enrichment
MF GO:0051536 iron-sulfur cluster binding IEP Enrichment
MF GO:0051537 2 iron, 2 sulfur cluster binding IEP Enrichment
MF GO:0051540 metal cluster binding IEP Enrichment
InterPro domains Description Start Stop
IPR041546 ClpA/ClpB_AAA_lid 436 536
IPR003959 ATPase_AAA_core 278 409
IPR003959 ATPase_AAA_core 706 766
IPR004176 Clp_R_dom 168 217
IPR004176 Clp_R_dom 97 149
No external refs found!