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  5. Cpa|evm.model.tig00001366.4

Cpa|evm.model.tig00001366.4 (tig00001366_g8379.t1)


Aliases : tig00001366_g8379.t1

Description : Protein biosynthesis.cytosolic ribosome.small subunit (SSU).SSU processome.UTP7 assembly factor


Gene families : OG_01_0003472 (OrthoFinder) Phylogenetic Tree(s): OG0003472_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00001366.4
Cluster HCCA: Cluster_45

Target Alias Description ECC score Gene Family Method Actions
Cre12.g502800 30793578 Protein biosynthesis.cytosolic ribosome.small subunit... 0.01 OrthoFinder
OT_01G05520.1 No alias BING4, C-terminal domain; WD40 repeat [Interproscan]. 0.02 OrthoFinder
Sro791_g202910.1 Contig1638.g14757 U3 small nucleolar RNA-associated protein 7 0.01 OrthoFinder
Transcript_contig_89926 89926 BING4, C-terminal domain [Interproscan]. 0.03 OrthoFinder
Vocar.0006s0162.1 32894373 WD40 repeat; BING4, C-terminal domain [Interproscan]. 0.01 OrthoFinder
XM_002508617.1 MICPUN_85803, 85803 WD40 repeat; BING4, C-terminal domain [Interproscan]. 0.02 OrthoFinder
lcl|BLLF01000094.1_cds_GFH07445.1_1922 HaLaN_02240, GFH07445 Hypothetical protein 0.04 OrthoFinder
lcl|BLLF01007107.1_cds_GFH32773.1_27250 HaLaN_32050, GFH32773 WD_REPEATS_REGION domain-containing protein 0.04 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEP Enrichment
MF GO:0004359 glutaminase activity IEP Enrichment
MF GO:0004812 aminoacyl-tRNA ligase activity IEP Enrichment
BP GO:0006139 nucleobase-containing compound metabolic process IEP Enrichment
BP GO:0006364 rRNA processing IEP Enrichment
BP GO:0006396 RNA processing IEP Enrichment
BP GO:0006520 cellular amino acid metabolic process IEP Enrichment
BP GO:0006541 glutamine metabolic process IEP Enrichment
BP GO:0006725 cellular aromatic compound metabolic process IEP Enrichment
BP GO:0006807 nitrogen compound metabolic process IEP Enrichment
BP GO:0008152 metabolic process IEP Enrichment
BP GO:0009064 glutamine family amino acid metabolic process IEP Enrichment
BP GO:0009987 cellular process IEP Enrichment
BP GO:0016070 RNA metabolic process IEP Enrichment
BP GO:0016072 rRNA metabolic process IEP Enrichment
MF GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds IEP Enrichment
MF GO:0016811 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides IEP Enrichment
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP Enrichment
BP GO:0019752 carboxylic acid metabolic process IEP Enrichment
BP GO:0030490 maturation of SSU-rRNA IEP Enrichment
BP GO:0034470 ncRNA processing IEP Enrichment
BP GO:0034641 cellular nitrogen compound metabolic process IEP Enrichment
BP GO:0034660 ncRNA metabolic process IEP Enrichment
BP GO:0043170 macromolecule metabolic process IEP Enrichment
BP GO:0043436 oxoacid metabolic process IEP Enrichment
BP GO:0044237 cellular metabolic process IEP Enrichment
BP GO:0044238 primary metabolic process IEP Enrichment
BP GO:0046483 heterocycle metabolic process IEP Enrichment
BP GO:0071704 organic substance metabolic process IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
MF GO:0140101 catalytic activity, acting on a tRNA IEP Enrichment
BP GO:1901360 organic cyclic compound metabolic process IEP Enrichment
BP GO:1901605 alpha-amino acid metabolic process IEP Enrichment
InterPro domains Description Start Stop
IPR012952 BING4_C_dom 335 411
No external refs found!