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  5. Cpa|evm.model.tig00001339.27

Cpa|evm.model.tig00001339.27 (tig00001339_g8284.t1)


Aliases : tig00001339_g8284.t1

Description : Protein biosynthesis.cytosolic ribosome.large subunit (LSU).LSU proteome component.RPL12 component


Gene families : OG_01_0003120 (OrthoFinder) Phylogenetic Tree(s): OG0003120_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00001339.27
Cluster HCCA: Cluster_43

Target Alias Description ECC score Gene Family Method Actions
Cre12.g528750 30793215, RPL12 Protein biosynthesis.cytosolic ribosome.large subunit... 0.28 OrthoFinder
Cz05g19100.t1 No alias Ribosomal protein L11, C-terminal [Interproscan]. 0.03 OrthoFinder
Cz05g19110.t1 No alias Ribosomal protein L11, N-terminal [Interproscan]. 0.29 OrthoFinder
Dusal.3410s00001.1 33201679 Ribosomal protein L11, N-terminal; Ribosomal protein... 0.08 OrthoFinder
EOD41717 No alias Ribosomal protein L11, C-terminal [Interproscan]. 0.09 OrthoFinder
OT_03G05460.1 No alias Ribosomal protein L11, N-terminal; Ribosomal protein... 0.16 OrthoFinder
PTI_14G02490.1 No alias Ribosomal protein L11, N-terminal; Ribosomal protein... 0.3 OrthoFinder
Sro82_g043980.1 Contig4032.g30989 60S ribosomal protein L12 (Fragment) 0.26 OrthoFinder
SymbC1.scaffold6598.3 6598.3 Ribosomal protein L11, C-terminal; Ribosomal protein... 0.04 OrthoFinder
SymbC1.scaffold7628.1 7628.1 Ribosomal protein L11, C-terminal; Ribosomal protein... 0.04 OrthoFinder
TP02G01920.1 No alias Ribosomal protein L11, C-terminal; Ribosomal protein... 0.27 OrthoFinder
Vocar.0037s0035.1 32897589 Ribosomal protein L11, C-terminal; Ribosomal protein... 0.12 OrthoFinder
XM_002507253.1 MICPUN_106714, 106714 Ribosomal protein L11, N-terminal; Ribosomal protein... 0.2 OrthoFinder
XM_003054785.1 MicpuC2_30629, 30629 Ribosomal protein L11, N-terminal; Ribosomal protein... 0.12 OrthoFinder
lcl|LHPG02000012.1_cds_PRW45184.1_1960 PRW45184 60S ribosomal L12-1 0.21 OrthoFinder
lcl|VRMN01000003.1_cds_KAA8495636.1_1634 KAA8495636 60S ribosomal protein L12 0.29 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0004222 metalloendopeptidase activity IEP Enrichment
BP GO:0006412 translation IEP Enrichment
BP GO:0006518 peptide metabolic process IEP Enrichment
BP GO:0006807 nitrogen compound metabolic process IEP Enrichment
BP GO:0008152 metabolic process IEP Enrichment
BP GO:0009058 biosynthetic process IEP Enrichment
BP GO:0009059 macromolecule biosynthetic process IEP Enrichment
BP GO:0010024 phytochromobilin biosynthetic process IEP Enrichment
MF GO:0016636 oxidoreductase activity, acting on the CH-CH group of donors, iron-sulfur protein as acceptor IEP Enrichment
BP GO:0019538 protein metabolic process IEP Enrichment
MF GO:0019843 rRNA binding IEP Enrichment
BP GO:0033013 tetrapyrrole metabolic process IEP Enrichment
BP GO:0033014 tetrapyrrole biosynthetic process IEP Enrichment
BP GO:0034641 cellular nitrogen compound metabolic process IEP Enrichment
BP GO:0034645 cellular macromolecule biosynthetic process IEP Enrichment
BP GO:0043043 peptide biosynthetic process IEP Enrichment
BP GO:0043170 macromolecule metabolic process IEP Enrichment
BP GO:0043603 cellular amide metabolic process IEP Enrichment
BP GO:0043604 amide biosynthetic process IEP Enrichment
BP GO:0044237 cellular metabolic process IEP Enrichment
BP GO:0044238 primary metabolic process IEP Enrichment
BP GO:0044249 cellular biosynthetic process IEP Enrichment
BP GO:0044260 cellular macromolecule metabolic process IEP Enrichment
BP GO:0044267 cellular protein metabolic process IEP Enrichment
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Enrichment
MF GO:0050897 cobalt ion binding IEP Enrichment
BP GO:0051202 phytochromobilin metabolic process IEP Enrichment
BP GO:0071704 organic substance metabolic process IEP Enrichment
BP GO:1901564 organonitrogen compound metabolic process IEP Enrichment
BP GO:1901566 organonitrogen compound biosynthetic process IEP Enrichment
BP GO:1901576 organic substance biosynthetic process IEP Enrichment
InterPro domains Description Start Stop
IPR020784 Ribosomal_L11_N 5 64
IPR020783 Ribosomal_L11_C 69 138
No external refs found!