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Aliases : tig00001130_g7262.t1
Description : Enzyme classification.EC_2 transferases.EC_2.1 transferase transferring one-carbon group(50.2.1 : 562.4) & Serine hydroxymethyltransferase 4 OS=Arabidopsis thaliana
Gene families : OG_01_0000330 (OrthoFinder) Phylogenetic Tree(s): OG0000330_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: Cpa|evm.model.tig00001130.31 | |
| Cluster | HCCA: Cluster_122 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| Cre16.g664550 | 30776923, SHMT1 | Amino acid metabolism.biosynthesis.serine... | 0.01 | OrthoFinder | |
| Cz03g20190.t1 | No alias | Serine hydroxymethyltransferase-like domain [Interproscan]. | 0.03 | OrthoFinder | |
| OT_14G02690.1 | No alias | Serine hydroxymethyltransferase-like domain [Interproscan]. | 0.06 | OrthoFinder | |
| SymbC1.scaffold5445.3 | 5445.3 | Serine hydroxymethyltransferase-like domain [Interproscan]. | 0.01 | OrthoFinder | |
| TP18G01090.1 | No alias | Serine hydroxymethyltransferase-like domain [Interproscan]. | 0.02 | OrthoFinder | |
| Transcript_contig_56285 | 56285 | Serine hydroxymethyltransferase-like domain [Interproscan]. | 0.02 | OrthoFinder | |
| Transcript_contig_78586 | 78586 | Serine hydroxymethyltransferase-like domain [Interproscan]. | 0.03 | OrthoFinder | |
| Vocar.0041s0018.1 | 32888726 | Serine hydroxymethyltransferase-like domain [Interproscan]. | 0.03 | OrthoFinder | |
| lcl|BLLF01001253.1_cds_GFH18143.1_12620 | HaLaN_14894, GFH18143 | Serine hydroxymethyltransferase | 0.02 | OrthoFinder | |
| lcl|LHPG02000001.1_cds_PRW61055.1_24 | PRW61055 | Serine hydroxymethyltransferase | 0.04 | OrthoFinder | |
| lcl|LHPG02000007.1_cds_PRW56902.1_8801 | PRW56902 | Serine hydroxymethyltransferase 3 | 0.01 | OrthoFinder | |
| lcl|VRMN01000003.1_cds_KAA8495612.1_1610 | KAA8495612 | Serine hydroxymethyltransferase 2, mitochondrial | 0.02 | OrthoFinder |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003674 | molecular_function | IEP | Enrichment |
| MF | GO:0003824 | catalytic activity | IEP | Enrichment |
| MF | GO:0003941 | L-serine ammonia-lyase activity | IEP | Enrichment |
| MF | GO:0004089 | carbonate dehydratase activity | IEP | Enrichment |
| MF | GO:0004222 | metalloendopeptidase activity | IEP | Enrichment |
| MF | GO:0004329 | formate-tetrahydrofolate ligase activity | IEP | Enrichment |
| MF | GO:0004486 | methylenetetrahydrofolate dehydrogenase [NAD(P)+] activity | IEP | Enrichment |
| MF | GO:0004488 | methylenetetrahydrofolate dehydrogenase (NADP+) activity | IEP | Enrichment |
| MF | GO:0004601 | peroxidase activity | IEP | Enrichment |
| MF | GO:0004784 | superoxide dismutase activity | IEP | Enrichment |
| CC | GO:0005741 | mitochondrial outer membrane | IEP | Enrichment |
| BP | GO:0005996 | monosaccharide metabolic process | IEP | Enrichment |
| BP | GO:0006006 | glucose metabolic process | IEP | Enrichment |
| BP | GO:0006066 | alcohol metabolic process | IEP | Enrichment |
| BP | GO:0006094 | gluconeogenesis | IEP | Enrichment |
| BP | GO:0006729 | tetrahydrobiopterin biosynthetic process | IEP | Enrichment |
| BP | GO:0006801 | superoxide metabolic process | IEP | Enrichment |
| BP | GO:0006810 | transport | IEP | Enrichment |
| BP | GO:0006869 | lipid transport | IEP | Enrichment |
| BP | GO:0006979 | response to oxidative stress | IEP | Enrichment |
| MF | GO:0008121 | ubiquinol-cytochrome-c reductase activity | IEP | Enrichment |
| MF | GO:0008124 | 4-alpha-hydroxytetrahydrobiopterin dehydratase activity | IEP | Enrichment |
| BP | GO:0008150 | biological_process | IEP | Enrichment |
| MF | GO:0008237 | metallopeptidase activity | IEP | Enrichment |
| BP | GO:0008272 | sulfate transport | IEP | Enrichment |
| MF | GO:0015116 | sulfate transmembrane transporter activity | IEP | Enrichment |
| MF | GO:0016209 | antioxidant activity | IEP | Enrichment |
| MF | GO:0016491 | oxidoreductase activity | IEP | Enrichment |
| MF | GO:0016645 | oxidoreductase activity, acting on the CH-NH group of donors | IEP | Enrichment |
| MF | GO:0016646 | oxidoreductase activity, acting on the CH-NH group of donors, NAD or NADP as acceptor | IEP | Enrichment |
| MF | GO:0016679 | oxidoreductase activity, acting on diphenols and related substances as donors | IEP | Enrichment |
| MF | GO:0016684 | oxidoreductase activity, acting on peroxide as acceptor | IEP | Enrichment |
| MF | GO:0016721 | oxidoreductase activity, acting on superoxide radicals as acceptor | IEP | Enrichment |
| MF | GO:0016730 | oxidoreductase activity, acting on iron-sulfur proteins as donors | IEP | Enrichment |
| MF | GO:0016829 | lyase activity | IEP | Enrichment |
| MF | GO:0016835 | carbon-oxygen lyase activity | IEP | Enrichment |
| MF | GO:0016836 | hydro-lyase activity | IEP | Enrichment |
| MF | GO:0016840 | carbon-nitrogen lyase activity | IEP | Enrichment |
| MF | GO:0016841 | ammonia-lyase activity | IEP | Enrichment |
| MF | GO:0016874 | ligase activity | IEP | Enrichment |
| BP | GO:0019318 | hexose metabolic process | IEP | Enrichment |
| BP | GO:0019319 | hexose biosynthetic process | IEP | Enrichment |
| BP | GO:0019751 | polyol metabolic process | IEP | Enrichment |
| CC | GO:0019867 | outer membrane | IEP | Enrichment |
| CC | GO:0031966 | mitochondrial membrane | IEP | Enrichment |
| CC | GO:0031968 | organelle outer membrane | IEP | Enrichment |
| BP | GO:0034311 | diol metabolic process | IEP | Enrichment |
| BP | GO:0034312 | diol biosynthetic process | IEP | Enrichment |
| BP | GO:0042558 | pteridine-containing compound metabolic process | IEP | Enrichment |
| BP | GO:0042559 | pteridine-containing compound biosynthetic process | IEP | Enrichment |
| MF | GO:0043169 | cation binding | IEP | Enrichment |
| BP | GO:0044283 | small molecule biosynthetic process | IEP | Enrichment |
| BP | GO:0046146 | tetrahydrobiopterin metabolic process | IEP | Enrichment |
| BP | GO:0046165 | alcohol biosynthetic process | IEP | Enrichment |
| BP | GO:0046173 | polyol biosynthetic process | IEP | Enrichment |
| BP | GO:0046364 | monosaccharide biosynthetic process | IEP | Enrichment |
| MF | GO:0046872 | metal ion binding | IEP | Enrichment |
| BP | GO:0051179 | localization | IEP | Enrichment |
| BP | GO:0051234 | establishment of localization | IEP | Enrichment |
| MF | GO:0051920 | peroxiredoxin activity | IEP | Enrichment |
| BP | GO:0055085 | transmembrane transport | IEP | Enrichment |
| BP | GO:0055114 | obsolete oxidation-reduction process | IEP | Enrichment |
| BP | GO:0061024 | membrane organization | IEP | Enrichment |
| BP | GO:0072348 | sulfur compound transport | IEP | Enrichment |
| BP | GO:0072593 | reactive oxygen species metabolic process | IEP | Enrichment |
| CC | GO:0098588 | bounding membrane of organelle | IEP | Enrichment |
| BP | GO:0120009 | intermembrane lipid transfer | IEP | Enrichment |
| BP | GO:1901615 | organic hydroxy compound metabolic process | IEP | Enrichment |
| BP | GO:1901617 | organic hydroxy compound biosynthetic process | IEP | Enrichment |
| MF | GO:1901682 | sulfur compound transmembrane transporter activity | IEP | Enrichment |
| No external refs found! |