1. Home
  2. Species
  3. Chromochloris zofingiensis
  4. Sequence
  5. Cz17g09200.t1

Cz17g09200.t1


Description : Peptidase S59, nucleoporin; Nuclear protein 96 [Interproscan].


Gene families : OG_01_0001263 (OrthoFinder) Phylogenetic Tree(s): OG0001263_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cz17g09200.t1
Cluster HCCA: Cluster_126

Target Alias Description ECC score Gene Family Method Actions
Cre02.g086887 30784868 Nuclear pore complex protein NUP98A OS=Arabidopsis thaliana 0.1 OrthoFinder
Dusal.0638s00008.1 33201549 Peptidase S59, nucleoporin; Nuclear protein 96 [Interproscan]. 0.03 OrthoFinder
EOD13372 No alias Peptidase S59, nucleoporin [Interproscan]. 0.02 OrthoFinder
OT_11G00840.1 No alias Nuclear protein 96 [Interproscan]. 0.02 OrthoFinder
PTI_08G02240.1 No alias Nuclear protein 96; Peptidase S59, nucleoporin;... 0.02 OrthoFinder
Sro1496_g277550.1 Contig2419.g19805 Pore complex protein Nup98-Nup96 0.02 OrthoFinder
Sro868_g213240.1 Contig2961.g23526 Pore complex protein Nup98-Nup96 0.02 OrthoFinder
Vocar.0004s0438.1 32889869 Nuclear protein 96; Peptidase S59, nucleoporin [Interproscan]. 0.02 OrthoFinder
lcl|BLLF01003464.1_cds_GFH27411.1_21888 HaLaN_25728, GFH27411 Peptidase S59 domain-containing protein 0.01 OrthoFinder
lcl|LHPG02000004.1_cds_PRW58789.1_7222 PRW58789 Nuclear pore complex NUP98A isoform X1 isoform B 0.04 OrthoFinder

Type GO Term Name Evidence Source
CC GO:0005643 nuclear pore IEA Interproscan
BP GO:0006913 nucleocytoplasmic transport IEA Interproscan
MF GO:0017056 structural constituent of nuclear pore IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEP Enrichment
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP Enrichment
MF GO:0003887 DNA-directed DNA polymerase activity IEP Enrichment
MF GO:0004674 protein serine/threonine kinase activity IEP Enrichment
MF GO:0004813 alanine-tRNA ligase activity IEP Enrichment
MF GO:0005515 protein binding IEP Enrichment
MF GO:0005543 phospholipid binding IEP Enrichment
CC GO:0005887 integral component of plasma membrane IEP Enrichment
BP GO:0006139 nucleobase-containing compound metabolic process IEP Enrichment
BP GO:0006354 DNA-templated transcription, elongation IEP Enrichment
BP GO:0006368 transcription elongation from RNA polymerase II promoter IEP Enrichment
BP GO:0006401 RNA catabolic process IEP Enrichment
BP GO:0006402 mRNA catabolic process IEP Enrichment
BP GO:0006419 alanyl-tRNA aminoacylation IEP Enrichment
BP GO:0006725 cellular aromatic compound metabolic process IEP Enrichment
BP GO:0006886 intracellular protein transport IEP Enrichment
BP GO:0006890 retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum IEP Enrichment
CC GO:0008023 transcription elongation factor complex IEP Enrichment
BP GO:0008104 protein localization IEP Enrichment
BP GO:0009306 protein secretion IEP Enrichment
BP GO:0009892 negative regulation of metabolic process IEP Enrichment
BP GO:0009966 regulation of signal transduction IEP Enrichment
BP GO:0010468 regulation of gene expression IEP Enrichment
BP GO:0010605 negative regulation of macromolecule metabolic process IEP Enrichment
BP GO:0010629 negative regulation of gene expression IEP Enrichment
BP GO:0010646 regulation of cell communication IEP Enrichment
BP GO:0015031 protein transport IEP Enrichment
BP GO:0016070 RNA metabolic process IEP Enrichment
BP GO:0016569 covalent chromatin modification IEP Enrichment
BP GO:0016570 histone modification IEP Enrichment
CC GO:0016593 Cdc73/Paf1 complex IEP Enrichment
MF GO:0017150 tRNA dihydrouridine synthase activity IEP Enrichment
BP GO:0019222 regulation of metabolic process IEP Enrichment
BP GO:0023051 regulation of signaling IEP Enrichment
CC GO:0031226 intrinsic component of plasma membrane IEP Enrichment
BP GO:0032012 regulation of ARF protein signal transduction IEP Enrichment
BP GO:0032940 secretion by cell IEP Enrichment
BP GO:0033036 macromolecule localization IEP Enrichment
MF GO:0034061 DNA polymerase activity IEP Enrichment
MF GO:0035091 phosphatidylinositol binding IEP Enrichment
BP GO:0035592 establishment of protein localization to extracellular region IEP Enrichment
BP GO:0045184 establishment of protein localization IEP Enrichment
BP GO:0046483 heterocycle metabolic process IEP Enrichment
BP GO:0046578 regulation of Ras protein signal transduction IEP Enrichment
BP GO:0046903 secretion IEP Enrichment
BP GO:0048583 regulation of response to stimulus IEP Enrichment
BP GO:0050789 regulation of biological process IEP Enrichment
BP GO:0051056 regulation of small GTPase mediated signal transduction IEP Enrichment
MF GO:0051087 chaperone binding IEP Enrichment
BP GO:0060255 regulation of macromolecule metabolic process IEP Enrichment
BP GO:0065007 biological regulation IEP Enrichment
BP GO:0071692 protein localization to extracellular region IEP Enrichment
BP GO:0071702 organic substance transport IEP Enrichment
BP GO:0071705 nitrogen compound transport IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
MF GO:0140097 catalytic activity, acting on DNA IEP Enrichment
MF GO:0140101 catalytic activity, acting on a tRNA IEP Enrichment
BP GO:0140352 export from cell IEP Enrichment
BP GO:1901360 organic cyclic compound metabolic process IEP Enrichment
BP GO:1902531 regulation of intracellular signal transduction IEP Enrichment
InterPro domains Description Start Stop
IPR007230 Peptidase_S59 71 213
IPR021967 Nup96 730 1037
No external refs found!