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  5. Cz16g02120.t1

Cz16g02120.t1


Description : Ribosomal protein L4/L1e; 60S ribosomal protein L4, C-terminal domain [Interproscan].


Gene families : OG_01_0002264 (OrthoFinder) Phylogenetic Tree(s): OG0002264_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cz16g02120.t1
Cluster HCCA: Cluster_16

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00022075.53 tig00022075_g23614.t1 Protein biosynthesis.cytosolic ribosome.large subunit... 0.08 OrthoFinder
Cre09.g397697 30781440, RPL4 Protein biosynthesis.cytosolic ribosome.large subunit... 0.13 OrthoFinder
Dusal.0242s00016.1 33196725 Ribosomal protein L4/L1e; 60S ribosomal protein L4,... 0.07 OrthoFinder
EOD06962 No alias 60S ribosomal protein L4, C-terminal domain; Ribosomal... 0.05 OrthoFinder
OT_16G01500.1 No alias Ribosomal protein L4/L1e; 60S ribosomal protein L4,... 0.1 OrthoFinder
PTI_00G01550.1 No alias 60S ribosomal protein L4, C-terminal domain; Ribosomal... 0.09 OrthoFinder
PTI_12G00050.1 No alias 60S ribosomal protein L4, C-terminal domain; Ribosomal... 0.08 OrthoFinder
Sro621_g176640.1 Contig1511.g13781 60S ribosomal protein L4 0.09 OrthoFinder
SymbC1.scaffold968.3 968.3 Ribosomal protein L4/L1e; 60S ribosomal protein L4,... 0.03 OrthoFinder
TP05G01880.1 No alias Ribosomal protein L4/L1e; 60S ribosomal protein L4,... 0.05 OrthoFinder
Vocar.0009s0214.1 32893255 60S ribosomal protein L4, C-terminal domain; Ribosomal... 0.05 OrthoFinder
XM_002506518.1 MICPUN_96004, 96004 Ribosomal protein L4/L1e; 60S ribosomal protein L4,... 0.04 OrthoFinder
XM_003063189.1 MicpuC2_45929, 45929 60S ribosomal protein L4, C-terminal domain; Ribosomal... 0.05 OrthoFinder
lcl|BLLF01002159.1_cds_GFH22946.1_17423 HaLaN_20485, GFH22946 Component of cytosolic 80S ribosome and 60S large subunit 0.06 OrthoFinder
lcl|LHPG02000017.1_cds_PRW33309.1_3617 PRW33309 60S ribosomal L4 isoform B 0.05 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000049 tRNA binding IEP Enrichment
BP GO:0001522 pseudouridine synthesis IEP Enrichment
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0003743 translation initiation factor activity IEP Enrichment
MF GO:0003824 catalytic activity IEP Enrichment
MF GO:0003849 3-deoxy-7-phosphoheptulonate synthase activity IEP Enrichment
MF GO:0003924 GTPase activity IEP Enrichment
MF GO:0004455 ketol-acid reductoisomerase activity IEP Enrichment
MF GO:0004486 methylenetetrahydrofolate dehydrogenase [NAD(P)+] activity IEP Enrichment
MF GO:0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity IEP Enrichment
MF GO:0004520 endodeoxyribonuclease activity IEP Enrichment
MF GO:0004531 deoxyribonuclease II activity IEP Enrichment
MF GO:0004536 deoxyribonuclease activity IEP Enrichment
MF GO:0004812 aminoacyl-tRNA ligase activity IEP Enrichment
MF GO:0005488 binding IEP Enrichment
MF GO:0005525 GTP binding IEP Enrichment
CC GO:0005737 cytoplasm IEP Enrichment
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP Enrichment
BP GO:0006082 organic acid metabolic process IEP Enrichment
BP GO:0006139 nucleobase-containing compound metabolic process IEP Enrichment
BP GO:0006399 tRNA metabolic process IEP Enrichment
BP GO:0006400 tRNA modification IEP Enrichment
BP GO:0006418 tRNA aminoacylation for protein translation IEP Enrichment
BP GO:0006450 regulation of translational fidelity IEP Enrichment
BP GO:0006520 cellular amino acid metabolic process IEP Enrichment
BP GO:0006725 cellular aromatic compound metabolic process IEP Enrichment
MF GO:0008097 5S rRNA binding IEP Enrichment
MF GO:0008135 translation factor activity, RNA binding IEP Enrichment
BP GO:0009072 aromatic amino acid family metabolic process IEP Enrichment
BP GO:0009073 aromatic amino acid family biosynthetic process IEP Enrichment
BP GO:0009081 branched-chain amino acid metabolic process IEP Enrichment
BP GO:0009082 branched-chain amino acid biosynthetic process IEP Enrichment
BP GO:0009451 RNA modification IEP Enrichment
MF GO:0009982 pseudouridine synthase activity IEP Enrichment
BP GO:0016053 organic acid biosynthetic process IEP Enrichment
BP GO:0016070 RNA metabolic process IEP Enrichment
MF GO:0016645 oxidoreductase activity, acting on the CH-NH group of donors IEP Enrichment
MF GO:0016646 oxidoreductase activity, acting on the CH-NH group of donors, NAD or NADP as acceptor IEP Enrichment
MF GO:0016763 pentosyltransferase activity IEP Enrichment
MF GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups IEP Enrichment
MF GO:0016874 ligase activity IEP Enrichment
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP Enrichment
MF GO:0016889 endodeoxyribonuclease activity, producing 3'-phosphomonoesters IEP Enrichment
MF GO:0016894 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 3'-phosphomonoesters IEP Enrichment
MF GO:0017111 nucleoside-triphosphatase activity IEP Enrichment
MF GO:0019001 guanyl nucleotide binding IEP Enrichment
BP GO:0019752 carboxylic acid metabolic process IEP Enrichment
MF GO:0019843 rRNA binding IEP Enrichment
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Enrichment
MF GO:0032561 guanyl ribonucleotide binding IEP Enrichment
BP GO:0034660 ncRNA metabolic process IEP Enrichment
BP GO:0042254 ribosome biogenesis IEP Enrichment
BP GO:0043038 amino acid activation IEP Enrichment
BP GO:0043039 tRNA aminoacylation IEP Enrichment
BP GO:0043436 oxoacid metabolic process IEP Enrichment
BP GO:0044085 cellular component biogenesis IEP Enrichment
BP GO:0044281 small molecule metabolic process IEP Enrichment
BP GO:0044283 small molecule biosynthetic process IEP Enrichment
MF GO:0045182 translation regulator activity IEP Enrichment
BP GO:0046483 heterocycle metabolic process IEP Enrichment
MF GO:0090079 translation regulator activity, nucleic acid binding IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
MF GO:0097159 organic cyclic compound binding IEP Enrichment
MF GO:0140098 catalytic activity, acting on RNA IEP Enrichment
MF GO:0140101 catalytic activity, acting on a tRNA IEP Enrichment
BP GO:1901360 organic cyclic compound metabolic process IEP Enrichment
MF GO:1901363 heterocyclic compound binding IEP Enrichment
InterPro domains Description Start Stop
IPR002136 Ribosomal_L4/L1e 23 260
IPR025755 Ribos_L4_C_dom 274 348
No external refs found!