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  5. Cz13g18040.t1

Cz13g18040.t1


Description : AAA ATPase, AAA+ lid domain; ATPase, AAA-type, core; Peptidase M41 [Interproscan].


Gene families : OG_01_0000075 (OrthoFinder) Phylogenetic Tree(s): OG0000075_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cz13g18040.t1
Cluster HCCA: Cluster_39

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00022075.42 tig00022075_g23603.t1 ATP-dependent zinc metalloprotease FTSH, chloroplastic... 0.02 OrthoFinder
Cre07.g352350 30774541 ATP-dependent zinc metalloprotease FTSH, chloroplastic... 0.06 OrthoFinder
Cre17.g739752 30782539 Probable inactive ATP-dependent zinc metalloprotease... 0.07 OrthoFinder
Dusal.0274s00008.1 33185615 ATPase, AAA-type, core; Peptidase M41 [Interproscan]. 0.03 OrthoFinder
OT_08G02770.1 No alias Peptidase M41; ATPase, AAA-type, core; AAA ATPase, AAA+... 0.06 OrthoFinder
OT_10G01100.1 No alias Peptidase M41; AAA ATPase, AAA+ lid domain; ATPase,... 0.05 OrthoFinder
OT_11G02060.1 No alias AAA ATPase, AAA+ lid domain; ATPase, AAA-type, core;... 0.04 OrthoFinder
OT_16G00870.1 No alias ATPase, AAA-type, core; AAA ATPase, AAA+ lid domain... 0.04 OrthoFinder
Transcript_contig_364 364 ATPase, AAA-type, core [Interproscan]. 0.02 OrthoFinder
Transcript_contig_54241 54241 Peptidase M41; ATPase, AAA-type, core; AAA ATPase, AAA+... 0.01 OrthoFinder
Transcript_contig_54409 54409 AAA ATPase, AAA+ lid domain; ATPase, AAA-type, core;... 0.02 OrthoFinder
Transcript_contig_54885 54885 Peptidase M41; ATPase, AAA-type, core; AAA ATPase, AAA+... 0.03 OrthoFinder
Vocar.0005s0095.1 32884072 Peptidase M41; ATPase, AAA-type, core; AAA ATPase, AAA+... 0.06 OrthoFinder
XM_002503449.1 MICPUN_59866, 59866 Peptidase M41; ATPase, AAA-type, core; AAA ATPase, AAA+... 0.04 OrthoFinder
XM_002503935.1 MICPUN_83563, 83563 AAA ATPase, AAA+ lid domain; ATPase, AAA-type, core... 0.04 OrthoFinder
XM_002508006.1 MICPUN_94954, 94954 Peptidase M41; ATPase, AAA-type, core; AAA ATPase, AAA+... 0.04 OrthoFinder
XM_002508974.1 MICPUN_87320, 87320 Peptidase M41; AAA ATPase, AAA+ lid domain; ATPase,... 0.03 OrthoFinder
XM_003061697.1 MicpuC2_28671, 28671 ATPase, AAA-type, core; AAA ATPase, AAA+ lid domain;... 0.04 OrthoFinder
lcl|BLLF01000459.1_cds_GFH12019.1_6496 HaLaN_07636, GFH12019 Putative cell division protease ftsH, chloroplastic 0.02 OrthoFinder
lcl|BLLF01003257.1_cds_GFH26835.1_21312 HaLaN_25053, GFH26835 AAA domain-containing protein 0.05 OrthoFinder
lcl|LHPG02000001.1_cds_PRW60934.1_745 PRW60934 ATP-dependent zinc metalloprotease chloroplastic isoform C 0.02 OrthoFinder
lcl|LHPG02000010.1_cds_PRW51102.1_1065 PRW51102 ATP-dependent zinc metalloprotease FTSH chloroplastic isoform B 0.02 OrthoFinder
lcl|LHPG02000018.1_cds_PRW33078.1_3788 PRW33078 ATP-dependent zinc metalloprotease 0.04 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0004222 metalloendopeptidase activity IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
BP GO:0006508 proteolysis IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000096 sulfur amino acid metabolic process IEP Enrichment
BP GO:0000097 sulfur amino acid biosynthetic process IEP Enrichment
BP GO:0000105 histidine biosynthetic process IEP Enrichment
BP GO:0000375 RNA splicing, via transesterification reactions IEP Enrichment
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Enrichment
BP GO:0000398 mRNA splicing, via spliceosome IEP Enrichment
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0003879 ATP phosphoribosyltransferase activity IEP Enrichment
MF GO:0004812 aminoacyl-tRNA ligase activity IEP Enrichment
MF GO:0004832 valine-tRNA ligase activity IEP Enrichment
CC GO:0005737 cytoplasm IEP Enrichment
BP GO:0006082 organic acid metabolic process IEP Enrichment
BP GO:0006139 nucleobase-containing compound metabolic process IEP Enrichment
BP GO:0006399 tRNA metabolic process IEP Enrichment
BP GO:0006418 tRNA aminoacylation for protein translation IEP Enrichment
BP GO:0006438 valyl-tRNA aminoacylation IEP Enrichment
BP GO:0006520 cellular amino acid metabolic process IEP Enrichment
BP GO:0006547 histidine metabolic process IEP Enrichment
BP GO:0006555 methionine metabolic process IEP Enrichment
BP GO:0006725 cellular aromatic compound metabolic process IEP Enrichment
MF GO:0008172 S-methyltransferase activity IEP Enrichment
BP GO:0008380 RNA splicing IEP Enrichment
BP GO:0008652 cellular amino acid biosynthetic process IEP Enrichment
MF GO:0008705 methionine synthase activity IEP Enrichment
BP GO:0009066 aspartate family amino acid metabolic process IEP Enrichment
BP GO:0009067 aspartate family amino acid biosynthetic process IEP Enrichment
BP GO:0009086 methionine biosynthetic process IEP Enrichment
CC GO:0009507 chloroplast IEP Enrichment
CC GO:0009536 plastid IEP Enrichment
BP GO:0016053 organic acid biosynthetic process IEP Enrichment
BP GO:0016070 RNA metabolic process IEP Enrichment
MF GO:0016763 pentosyltransferase activity IEP Enrichment
MF GO:0016779 nucleotidyltransferase activity IEP Enrichment
MF GO:0016874 ligase activity IEP Enrichment
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP Enrichment
MF GO:0017069 snRNA binding IEP Enrichment
MF GO:0017070 U6 snRNA binding IEP Enrichment
BP GO:0019752 carboxylic acid metabolic process IEP Enrichment
CC GO:0019867 outer membrane IEP Enrichment
MF GO:0030623 U5 snRNA binding IEP Enrichment
MF GO:0031419 cobalamin binding IEP Enrichment
BP GO:0034641 cellular nitrogen compound metabolic process IEP Enrichment
BP GO:0034660 ncRNA metabolic process IEP Enrichment
MF GO:0042084 5-methyltetrahydrofolate-dependent methyltransferase activity IEP Enrichment
BP GO:0042558 pteridine-containing compound metabolic process IEP Enrichment
BP GO:0043038 amino acid activation IEP Enrichment
BP GO:0043039 tRNA aminoacylation IEP Enrichment
BP GO:0043436 oxoacid metabolic process IEP Enrichment
BP GO:0044237 cellular metabolic process IEP Enrichment
BP GO:0044272 sulfur compound biosynthetic process IEP Enrichment
BP GO:0044281 small molecule metabolic process IEP Enrichment
BP GO:0046394 carboxylic acid biosynthetic process IEP Enrichment
BP GO:0046483 heterocycle metabolic process IEP Enrichment
MF GO:0070569 uridylyltransferase activity IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
MF GO:0140098 catalytic activity, acting on RNA IEP Enrichment
MF GO:0140101 catalytic activity, acting on a tRNA IEP Enrichment
BP GO:1901360 organic cyclic compound metabolic process IEP Enrichment
InterPro domains Description Start Stop
IPR003959 ATPase_AAA_core 236 366
IPR000642 Peptidase_M41 465 668
IPR041569 AAA_lid_3 390 431
No external refs found!