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  5. Cz13g08100.t1

Cz13g08100.t1


Description : RecF/RecN/SMC, N-terminal; SMCs flexible hinge [Interproscan].


Gene families : OG_01_0001808 (OrthoFinder) Phylogenetic Tree(s): OG0001808_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cz13g08100.t1
Cluster HCCA: Cluster_122

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000711.46 tig00000711_g3409.t1 Structural maintenance of chromosomes protein 3... 0.04 OrthoFinder
Cre10.g445650 30790176, SMC3 Cell cycle.mitosis and meiosis.sister chromatid... 0.05 OrthoFinder
Dusal.0573s00002.1 33189042 RecF/RecN/SMC, N-terminal; SMCs flexible hinge [Interproscan]. 0.02 OrthoFinder
EOD06899 No alias Hypothetical protein [Ensembl]. 0.07 OrthoFinder
EOD23678 No alias Hypothetical protein [Ensembl]. 0.02 OrthoFinder
OT_09G02100.1 No alias RecF/RecN/SMC, N-terminal; SMCs flexible hinge [Interproscan]. 0.09 OrthoFinder
Transcript_contig_54820 54820 RecF/RecN/SMC, N-terminal; SMCs flexible hinge [Interproscan]. 0.03 OrthoFinder
XM_002508766.1 MICPUN_85842, 85842 Condensin complex component 0.05 OrthoFinder
XM_003056761.1 MicpuC2_25650, 25650 Condensin complex component 0.03 OrthoFinder
lcl|VRMN01000003.1_cds_KAA8495602.1_1600 KAA8495602 Chromosome segregation protein sudA 0.03 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
CC GO:0005694 chromosome IEA Interproscan
BP GO:0051276 chromosome organization IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000145 exocyst IEP Enrichment
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003677 DNA binding IEP Enrichment
MF GO:0003916 DNA topoisomerase activity IEP Enrichment
MF GO:0003918 DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity IEP Enrichment
MF GO:0004177 aminopeptidase activity IEP Enrichment
BP GO:0006259 DNA metabolic process IEP Enrichment
BP GO:0006265 DNA topological change IEP Enrichment
BP GO:0006887 exocytosis IEP Enrichment
BP GO:0007062 sister chromatid cohesion IEP Enrichment
BP GO:0007064 mitotic sister chromatid cohesion IEP Enrichment
MF GO:0008408 3'-5' exonuclease activity IEP Enrichment
BP GO:0022402 cell cycle process IEP Enrichment
BP GO:0032940 secretion by cell IEP Enrichment
BP GO:0046903 secretion IEP Enrichment
BP GO:0071103 DNA conformation change IEP Enrichment
CC GO:0099023 vesicle tethering complex IEP Enrichment
MF GO:0140097 catalytic activity, acting on DNA IEP Enrichment
BP GO:0140352 export from cell IEP Enrichment
BP GO:1903047 mitotic cell cycle process IEP Enrichment
InterPro domains Description Start Stop
IPR003395 RecF/RecN/SMC_N 2 1187
IPR010935 SMC_hinge 522 636
No external refs found!