1. Home
  2. Species
  3. Chromochloris zofingiensis
  4. Sequence
  5. Cz12g28100.t1

Cz12g28100.t1


Description : Helicase, C-terminal; Domain of unknown function DUF1605; Helicase-associated domain [Interproscan].


Gene families : OG_01_0000042 (OrthoFinder) Phylogenetic Tree(s): OG0000042_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cz12g28100.t1
Cluster HCCA: Cluster_82

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000842.2 tig00000842_g4821.t2 Probable pre-mRNA-splicing factor ATP-dependent RNA... 0.02 OrthoFinder
Cpa|evm.model.tig00000984.27 tig00000984_g6004.t1 Pre-mRNA-splicing factor ATP-dependent RNA helicase... 0.02 OrthoFinder
Cpa|evm.model.tig00020531.53 tig00020531_g10059.t1 Pre-mRNA-splicing factor ATP-dependent RNA helicase... 0.03 OrthoFinder
Cre03.g182950 30787736 RNA processing.RNA splicing.spliceosome... 0.02 OrthoFinder
Cre07.g349100 30774605 RNA processing.RNA splicing.spliceosome... 0.03 OrthoFinder
Dusal.0003s00057.1 33187539 Helicase, C-terminal; Domain of unknown function... 0.02 OrthoFinder
Dusal.0244s00011.1 33186504 Helicase, C-terminal; DEAD/DEAH box helicase domain... 0.03 OrthoFinder
EOD05883 No alias ATP-dependent RNA helicase [Ensembl]. 0.02 OrthoFinder
EOD10970 No alias Helicase, C-terminal; Domain of unknown function... 0.04 OrthoFinder
EOD26794 No alias Helicase, C-terminal; Domain of unknown function... 0.02 OrthoFinder
EOD28324 No alias Helicase, C-terminal; Domain of unknown function... 0.03 OrthoFinder
EOD29635 No alias ATP-dependent RNA helicase [Ensembl]. 0.03 OrthoFinder
EOD31099 No alias Domain of unknown function DUF1605 [Interproscan]. 0.02 OrthoFinder
EOD31583 No alias Helicase, C-terminal; Domain of unknown function... 0.02 OrthoFinder
EOD37846 No alias ATP-dependent RNA helicase [Ensembl]. 0.02 OrthoFinder
OT_08G03320.1 No alias Helicase-associated domain; Helicase, C-terminal; Domain... 0.03 OrthoFinder
OT_14G00410.1 No alias Helicase-associated domain; Helicase, C-terminal; Domain... 0.02 OrthoFinder
PTI_07G01260.1 No alias Helicase, C-terminal; Helicase-associated domain; Domain... 0.02 OrthoFinder
PTI_07G04380.1 No alias Helicase, C-terminal; Domain of unknown function... 0.02 OrthoFinder
PTI_11G03860.1 No alias Helicase, C-terminal; Helicase-associated domain; Domain... 0.02 OrthoFinder
PTI_28G00240.1 No alias Helicase, C-terminal; Helicase-associated domain; Domain... 0.02 OrthoFinder
Sro1496_g277510.1 Contig2419.g19801 Splicing factor ATP-dependent RNA helicase 0.02 OrthoFinder
Sro1676_g290440.1 Contig3487.g27033 Splicing factor ATP-dependent RNA helicase 0.01 OrthoFinder
Sro657_g182550.1 Contig301.g3975 Splicing factor ATP-dependent RNA helicase-like protein cdc28 0.03 OrthoFinder
TP06G06120.1 No alias Domain of unknown function DUF1605; Helicase,... 0.03 OrthoFinder
TP20G00330.1 No alias Helicase-associated domain [Interproscan]. 0.02 OrthoFinder
Transcript_contig_53761 53761 Helicase-associated domain; Helicase, C-terminal; Domain... 0.02 OrthoFinder
Transcript_contig_55707 55707 Helicase, C-terminal; S1 domain; DEAD/DEAH box helicase... 0.01 OrthoFinder
Transcript_contig_89480 89480 Helicase-associated domain; Helicase, C-terminal; Domain... 0.01 OrthoFinder
XM_002500528.1 MICPUN_97165, 97165 Helicase, C-terminal; Helicase-associated domain; Domain... 0.03 OrthoFinder
XM_002501417.1 MICPUN_58037, 58037 Helicase, C-terminal; Helicase-associated domain; Domain... 0.05 OrthoFinder
XM_002508712.1 MICPUN_97967, 97967 Helicase, C-terminal; Helicase-associated domain;... 0.03 OrthoFinder
XM_003057993.1 MicpuC2_57106, 57106 Helicase, C-terminal; Helicase-associated domain; Domain... 0.02 OrthoFinder
XM_003062998.1 MicpuC2_71074, 71074 RNA helicase, splicing factor 0.02 OrthoFinder
lcl|BLLF01007495.1_cds_GFH32977.1_27454 HaLaN_32283, GFH32977 Helicase-associated domain [Interproscan]. 0.02 OrthoFinder
lcl|LHPG02000004.1_cds_PRW59127.1_7530 PRW59127 Pre-mRNA-splicing factor ATP-dependent RNA helicase... 0.03 OrthoFinder
lcl|LHPG02000005.1_cds_PRW58375.1_7631 PRW58375 Putative pre-mRNA-splicing factor ATP-dependent RNA helicase 0.02 OrthoFinder
lcl|LHPG02000011.1_cds_PRW45383.1_1250 PRW45383 ATP-dependent RNA helicase dhx8 isoform A 0.03 OrthoFinder
lcl|LHPG02000011.1_cds_PRW45384.1_1249 PRW45384 ATP-dependent RNA helicase dhx8 isoform B 0.02 OrthoFinder
lcl|LHPG02000016.1_cds_PRW33665.1_3289 PRW33665 Putative ATP-dependent RNA helicase DHX35 0.02 OrthoFinder
lcl|VRMN01000002.1_cds_KAA8497022.1_751 KAA8497022 ATP-dependent RNA helicase dhx8 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0004386 helicase activity IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Enrichment
BP GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEP Enrichment
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP Enrichment
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003677 DNA binding IEP Enrichment
MF GO:0003682 chromatin binding IEP Enrichment
MF GO:0003690 double-stranded DNA binding IEP Enrichment
MF GO:0003887 DNA-directed DNA polymerase activity IEP Enrichment
MF GO:0004672 protein kinase activity IEP Enrichment
MF GO:0004674 protein serine/threonine kinase activity IEP Enrichment
MF GO:0004813 alanine-tRNA ligase activity IEP Enrichment
MF GO:0005096 GTPase activator activity IEP Enrichment
MF GO:0005488 binding IEP Enrichment
MF GO:0005515 protein binding IEP Enrichment
MF GO:0005524 ATP binding IEP Enrichment
MF GO:0005543 phospholipid binding IEP Enrichment
CC GO:0005634 nucleus IEP Enrichment
CC GO:0005643 nuclear pore IEP Enrichment
BP GO:0005984 disaccharide metabolic process IEP Enrichment
BP GO:0005991 trehalose metabolic process IEP Enrichment
BP GO:0005992 trehalose biosynthetic process IEP Enrichment
BP GO:0006139 nucleobase-containing compound metabolic process IEP Enrichment
BP GO:0006355 regulation of transcription, DNA-templated IEP Enrichment
BP GO:0006396 RNA processing IEP Enrichment
BP GO:0006397 mRNA processing IEP Enrichment
BP GO:0006401 RNA catabolic process IEP Enrichment
BP GO:0006402 mRNA catabolic process IEP Enrichment
BP GO:0006419 alanyl-tRNA aminoacylation IEP Enrichment
BP GO:0006464 cellular protein modification process IEP Enrichment
BP GO:0006468 protein phosphorylation IEP Enrichment
BP GO:0006725 cellular aromatic compound metabolic process IEP Enrichment
BP GO:0006793 phosphorus metabolic process IEP Enrichment
BP GO:0006796 phosphate-containing compound metabolic process IEP Enrichment
BP GO:0006807 nitrogen compound metabolic process IEP Enrichment
BP GO:0006913 nucleocytoplasmic transport IEP Enrichment
MF GO:0008134 transcription factor binding IEP Enrichment
BP GO:0008150 biological_process IEP Enrichment
BP GO:0008152 metabolic process IEP Enrichment
BP GO:0009311 oligosaccharide metabolic process IEP Enrichment
BP GO:0009312 oligosaccharide biosynthetic process IEP Enrichment
BP GO:0009889 regulation of biosynthetic process IEP Enrichment
BP GO:0009892 negative regulation of metabolic process IEP Enrichment
BP GO:0009987 cellular process IEP Enrichment
BP GO:0010468 regulation of gene expression IEP Enrichment
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Enrichment
BP GO:0010605 negative regulation of macromolecule metabolic process IEP Enrichment
BP GO:0010629 negative regulation of gene expression IEP Enrichment
BP GO:0016070 RNA metabolic process IEP Enrichment
BP GO:0016071 mRNA metabolic process IEP Enrichment
MF GO:0016301 kinase activity IEP Enrichment
BP GO:0016310 phosphorylation IEP Enrichment
MF GO:0016740 transferase activity IEP Enrichment
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP Enrichment
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP Enrichment
MF GO:0017025 TBP-class protein binding IEP Enrichment
MF GO:0017056 structural constituent of nuclear pore IEP Enrichment
MF GO:0017076 purine nucleotide binding IEP Enrichment
MF GO:0017150 tRNA dihydrouridine synthase activity IEP Enrichment
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Enrichment
BP GO:0019222 regulation of metabolic process IEP Enrichment
BP GO:0019538 protein metabolic process IEP Enrichment
MF GO:0030554 adenyl nucleotide binding IEP Enrichment
MF GO:0030695 GTPase regulator activity IEP Enrichment
BP GO:0031323 regulation of cellular metabolic process IEP Enrichment
BP GO:0031326 regulation of cellular biosynthetic process IEP Enrichment
MF GO:0032553 ribonucleotide binding IEP Enrichment
MF GO:0032555 purine ribonucleotide binding IEP Enrichment
MF GO:0032559 adenyl ribonucleotide binding IEP Enrichment
MF GO:0034061 DNA polymerase activity IEP Enrichment
BP GO:0034637 cellular carbohydrate biosynthetic process IEP Enrichment
BP GO:0034641 cellular nitrogen compound metabolic process IEP Enrichment
MF GO:0035091 phosphatidylinositol binding IEP Enrichment
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Enrichment
MF GO:0036094 small molecule binding IEP Enrichment
BP GO:0036211 protein modification process IEP Enrichment
MF GO:0043167 ion binding IEP Enrichment
MF GO:0043168 anion binding IEP Enrichment
BP GO:0043170 macromolecule metabolic process IEP Enrichment
CC GO:0043226 organelle IEP Enrichment
CC GO:0043227 membrane-bounded organelle IEP Enrichment
CC GO:0043229 intracellular organelle IEP Enrichment
CC GO:0043231 intracellular membrane-bounded organelle IEP Enrichment
BP GO:0043412 macromolecule modification IEP Enrichment
BP GO:0044237 cellular metabolic process IEP Enrichment
BP GO:0044238 primary metabolic process IEP Enrichment
BP GO:0044260 cellular macromolecule metabolic process IEP Enrichment
BP GO:0044267 cellular protein metabolic process IEP Enrichment
BP GO:0046351 disaccharide biosynthetic process IEP Enrichment
BP GO:0046483 heterocycle metabolic process IEP Enrichment
BP GO:0050789 regulation of biological process IEP Enrichment
BP GO:0050794 regulation of cellular process IEP Enrichment
MF GO:0051087 chaperone binding IEP Enrichment
BP GO:0051169 nuclear transport IEP Enrichment
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Enrichment
BP GO:0051252 regulation of RNA metabolic process IEP Enrichment
BP GO:0060255 regulation of macromolecule metabolic process IEP Enrichment
BP GO:0065007 biological regulation IEP Enrichment
BP GO:0071704 organic substance metabolic process IEP Enrichment
BP GO:0080090 regulation of primary metabolic process IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
MF GO:0097159 organic cyclic compound binding IEP Enrichment
MF GO:0097367 carbohydrate derivative binding IEP Enrichment
MF GO:0140096 catalytic activity, acting on a protein IEP Enrichment
MF GO:0140101 catalytic activity, acting on a tRNA IEP Enrichment
MF GO:0140296 general transcription initiation factor binding IEP Enrichment
MF GO:1901265 nucleoside phosphate binding IEP Enrichment
BP GO:1901360 organic cyclic compound metabolic process IEP Enrichment
MF GO:1901363 heterocyclic compound binding IEP Enrichment
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Enrichment
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Enrichment
BP GO:2001141 regulation of RNA biosynthetic process IEP Enrichment
InterPro domains Description Start Stop
IPR007502 Helicase-assoc_dom 841 915
IPR011709 DUF1605 989 1066
IPR001650 Helicase_C 652 778
No external refs found!