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  5. Cz11g19140.t1

Cz11g19140.t1


Description : DNA topoisomerase, type IIA, subunit B, domain 2; TOPRIM domain; C-terminal associated domain of TOPRIM; DNA topoisomerase, type IIA, subunit A/C-terminal; Histidine kinase/HSP90-like ATPase [Interproscan].


Gene families : OG_01_0001339 (OrthoFinder) Phylogenetic Tree(s): OG0001339_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cz11g19140.t1
Cluster HCCA: Cluster_79

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00021432.55 tig00021432_g21247.t1 DNA topoisomerase 2 OS=Pisum sativum 0.06 OrthoFinder
Cpa|evm.model.tig00021433.2 tig00021433_g21256.t1 DNA topoisomerase 2 OS=Arabidopsis thaliana 0.02 OrthoFinder
Cre01.g009250 30789357, TOP2 Cell cycle.interphase.DNA replication.preinitiation.TOP2... 0.08 OrthoFinder
Dusal.0487s00005.1 33203263 Histidine kinase/HSP90-like ATPase; C-terminal... 0.05 OrthoFinder
EOD17812 No alias Putative DNA topoisomerase II [Ensembl]. 0.01 OrthoFinder
EOD22469 No alias DNA topoisomerase, type IIA, subunit A/C-terminal; DNA... 0.05 OrthoFinder
OT_13G00120.1 No alias TOPRIM domain; DNA topoisomerase, type IIA, subunit B,... 0.06 OrthoFinder
PTI_12G02730.1 No alias TOPRIM domain; DNA topoisomerase, type IIA, subunit... 0.04 OrthoFinder
Sro150_g068880.1 Contig1519.g13851 DNA topoisomerase 2 top-2 0.04 OrthoFinder
TP10G02490.1 No alias DNA topoisomerase, type IIA, subunit A/C-terminal;... 0.04 OrthoFinder
TP10G02750.1 No alias DNA topoisomerase, type IIA, subunit A/C-terminal;... 0.02 OrthoFinder
Vocar.0024s0199.1 32890400 Histidine kinase/HSP90-like ATPase; TOPRIM domain; DNA... 0.07 OrthoFinder
XM_002501981.1 MICPUN_58377, 58377 DNA topoisomerase, type IIA, subunit A/C-terminal; DNA... 0.05 OrthoFinder
XM_003057460.1 MicpuC2_46870, 46870 TOPRIM domain; DNA topoisomerase, type IIA, subunit... 0.02 OrthoFinder
lcl|LHPG02000005.1_cds_PRW58281.1_7787 PRW58281 DNA topoisomerase 2 0.02 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8497819.1_6772 KAA8497819 DNA topoisomerase 2 0.07 OrthoFinder
lcl|VRMN01000008.1_cds_KAA8492722.1_2458 KAA8492722 DNA topoisomerase 2 0.06 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0003918 DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
BP GO:0006265 DNA topological change IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000776 kinetochore IEP Enrichment
MF GO:0003774 motor activity IEP Enrichment
MF GO:0003777 microtubule motor activity IEP Enrichment
MF GO:0004748 ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor IEP Enrichment
MF GO:0005515 protein binding IEP Enrichment
CC GO:0005634 nucleus IEP Enrichment
CC GO:0005856 cytoskeleton IEP Enrichment
BP GO:0006260 DNA replication IEP Enrichment
BP GO:0006275 regulation of DNA replication IEP Enrichment
BP GO:0006928 movement of cell or subcellular component IEP Enrichment
BP GO:0006950 response to stress IEP Enrichment
BP GO:0006974 cellular response to DNA damage stimulus IEP Enrichment
BP GO:0007017 microtubule-based process IEP Enrichment
BP GO:0007018 microtubule-based movement IEP Enrichment
MF GO:0008017 microtubule binding IEP Enrichment
BP GO:0008064 regulation of actin polymerization or depolymerization IEP Enrichment
MF GO:0008092 cytoskeletal protein binding IEP Enrichment
BP GO:0008156 negative regulation of DNA replication IEP Enrichment
BP GO:0009890 negative regulation of biosynthetic process IEP Enrichment
BP GO:0010558 negative regulation of macromolecule biosynthetic process IEP Enrichment
MF GO:0015631 tubulin binding IEP Enrichment
MF GO:0016462 pyrophosphatase activity IEP Enrichment
MF GO:0016725 oxidoreductase activity, acting on CH or CH2 groups IEP Enrichment
MF GO:0016728 oxidoreductase activity, acting on CH or CH2 groups, disulfide as acceptor IEP Enrichment
MF GO:0016787 hydrolase activity IEP Enrichment
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Enrichment
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Enrichment
MF GO:0017111 nucleoside-triphosphatase activity IEP Enrichment
BP GO:0030832 regulation of actin filament length IEP Enrichment
BP GO:0030833 regulation of actin filament polymerization IEP Enrichment
CC GO:0031262 Ndc80 complex IEP Enrichment
BP GO:0031324 negative regulation of cellular metabolic process IEP Enrichment
BP GO:0031327 negative regulation of cellular biosynthetic process IEP Enrichment
BP GO:0032271 regulation of protein polymerization IEP Enrichment
BP GO:0032535 regulation of cellular component size IEP Enrichment
BP GO:0032956 regulation of actin cytoskeleton organization IEP Enrichment
BP GO:0032970 regulation of actin filament-based process IEP Enrichment
BP GO:0033043 regulation of organelle organization IEP Enrichment
BP GO:0033554 cellular response to stress IEP Enrichment
MF GO:0043015 gamma-tubulin binding IEP Enrichment
MF GO:0043138 3'-5' DNA helicase activity IEP Enrichment
CC GO:0043226 organelle IEP Enrichment
CC GO:0043227 membrane-bounded organelle IEP Enrichment
CC GO:0043229 intracellular organelle IEP Enrichment
CC GO:0043231 intracellular membrane-bounded organelle IEP Enrichment
BP GO:0043254 regulation of protein-containing complex assembly IEP Enrichment
BP GO:0044087 regulation of cellular component biogenesis IEP Enrichment
BP GO:0045005 DNA-dependent DNA replication maintenance of fidelity IEP Enrichment
BP GO:0048478 replication fork protection IEP Enrichment
BP GO:0050896 response to stimulus IEP Enrichment
BP GO:0051128 regulation of cellular component organization IEP Enrichment
BP GO:0051493 regulation of cytoskeleton organization IEP Enrichment
BP GO:0051716 cellular response to stimulus IEP Enrichment
MF GO:0061731 ribonucleoside-diphosphate reductase activity IEP Enrichment
BP GO:0090066 regulation of anatomical structure size IEP Enrichment
BP GO:0090329 regulation of DNA-dependent DNA replication IEP Enrichment
CC GO:0099080 supramolecular complex IEP Enrichment
BP GO:0110053 regulation of actin filament organization IEP Enrichment
BP GO:1902903 regulation of supramolecular fiber organization IEP Enrichment
BP GO:2000104 negative regulation of DNA-dependent DNA replication IEP Enrichment
BP GO:2000113 negative regulation of cellular macromolecule biosynthetic process IEP Enrichment
InterPro domains Description Start Stop
IPR013506 Topo_IIA_bsu_dom2 305 436
IPR006171 TOPRIM_domain 468 566
IPR002205 Topo_IIA_A/C 711 1184
IPR031660 TOPRIM_C 582 708
IPR003594 HATPase_C 93 224
No external refs found!