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  5. Cz10g29210.t1

Cz10g29210.t1


Description : Ribosomal protein L5 eukaryotic/L18 archaeal; Ribosomal protein L5 eukaryotic/L18 archaeal, C-terminal [Interproscan].


Gene families : OG_01_0002830 (OrthoFinder) Phylogenetic Tree(s): OG0002830_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cz10g29210.t1
Cluster HCCA: Cluster_16

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000194.49 tig00000194_g14777.t1 Protein biosynthesis.cytosolic ribosome.large subunit... 0.13 OrthoFinder
Cre14.g621450 30776682, RPL5 Protein biosynthesis.cytosolic ribosome.large subunit... 0.21 OrthoFinder
Dusal.0029s00017.1 33203768 Ribosomal protein L5 eukaryotic/L18 archaeal; Ribosomal... 0.16 OrthoFinder
EOD29298 No alias Ribosomal protein L5 eukaryotic/L18 archaeal,... 0.17 OrthoFinder
EOD40079 No alias Ribosomal protein L5 eukaryotic/L18 archaeal, C-terminal... 0.04 OrthoFinder
OT_15G01250.1 No alias Ribosomal protein L5 eukaryotic/L18 archaeal,... 0.14 OrthoFinder
PTI_01G05820.1 No alias Ribosomal protein L5 eukaryotic/L18 archaeal; Ribosomal... 0.1 OrthoFinder
Sro872_g213940.1 Contig2262.g18776 60S ribosomal protein L5 0.14 OrthoFinder
SymbC1.scaffold1162.12 1162.12 Ribosomal protein L5 eukaryotic/L18 archaeal,... 0.06 OrthoFinder
SymbC1.scaffold8671.2 8671.2 Ribosomal protein L5 eukaryotic/L18 archaeal,... 0.03 OrthoFinder
TP18G00890.1 No alias Ribosomal protein L5 eukaryotic/L18 archaeal; Ribosomal... 0.11 OrthoFinder
Transcript_contig_79973 79973 Ribosomal protein L5 eukaryotic/L18 archaeal [Interproscan]. 0.03 OrthoFinder
Vocar.0004s0107.1 32889418 Ribosomal protein L5 eukaryotic/L18 archaeal,... 0.08 OrthoFinder
XM_002501895.1 MICPUN_108173, 108173 Ribosomal protein L5 eukaryotic/L18 archaeal; Ribosomal... 0.1 OrthoFinder
XM_003057549.1 MicpuC2_49536, 49536 Ribosomal protein L5 eukaryotic/L18 archaeal; Ribosomal... 0.03 OrthoFinder
lcl|BLLF01000001.1_cds_GFH05536.1_13 HaLaN_00015, GFH05536 Ribosomal_L18_c domain-containing protein 0.12 OrthoFinder
lcl|LHPG02000024.1_cds_PRW20400.1_5627 PRW20400 60S ribosomal L5 0.11 OrthoFinder
lcl|VRMN01000003.1_cds_KAA8495592.1_1590 KAA8495592 60S ribosomal protein L5 0.03 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
MF GO:0008097 5S rRNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003743 translation initiation factor activity IEP Enrichment
MF GO:0003924 GTPase activity IEP Enrichment
MF GO:0004520 endodeoxyribonuclease activity IEP Enrichment
MF GO:0004531 deoxyribonuclease II activity IEP Enrichment
MF GO:0004536 deoxyribonuclease activity IEP Enrichment
MF GO:0005525 GTP binding IEP Enrichment
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP Enrichment
BP GO:0006400 tRNA modification IEP Enrichment
MF GO:0016462 pyrophosphatase activity IEP Enrichment
MF GO:0016763 pentosyltransferase activity IEP Enrichment
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Enrichment
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Enrichment
MF GO:0016889 endodeoxyribonuclease activity, producing 3'-phosphomonoesters IEP Enrichment
MF GO:0016894 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 3'-phosphomonoesters IEP Enrichment
MF GO:0017111 nucleoside-triphosphatase activity IEP Enrichment
MF GO:0019001 guanyl nucleotide binding IEP Enrichment
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Enrichment
MF GO:0032561 guanyl ribonucleotide binding IEP Enrichment
BP GO:0042254 ribosome biogenesis IEP Enrichment
BP GO:0044085 cellular component biogenesis IEP Enrichment
InterPro domains Description Start Stop
IPR005485 Rbsml_L5_euk/L18_arc 14 176
IPR025607 Rbsml_L5e/L18P_C 191 283
No external refs found!