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  5. Cz10g28050.t1

Cz10g28050.t1


Description : Ribosomal protein S5, C-terminal; Ribosomal protein S5, N-terminal [Interproscan].


Gene families : OG_01_0000781 (OrthoFinder) Phylogenetic Tree(s): OG0000781_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cz10g28050.t1
Cluster HCCA: Cluster_138

Target Alias Description ECC score Gene Family Method Actions
EOD36000 No alias Ribosomal protein S5, C-terminal; Ribosomal protein S5,... 0.03 OrthoFinder
Sro1022_g232380.1 Contig2862.g22952 Protein S5 0.01 OrthoFinder
SymbC1.scaffold2.900 2.900 Ribosomal protein S5, N-terminal; Ribosomal protein S5,... 0.02 OrthoFinder
XM_003057718.1 MicpuC2_32996, 32996 Ribosomal protein S5, C-terminal; Ribosomal protein S5,... 0.02 OrthoFinder
lcl|LHPG02000008.1_cds_PRW56846.1_9491 PRW56846 30S ribosomal S5 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Enrichment
BP GO:0001522 pseudouridine synthesis IEP Enrichment
MF GO:0003677 DNA binding IEP Enrichment
MF GO:0003916 DNA topoisomerase activity IEP Enrichment
MF GO:0003918 DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity IEP Enrichment
MF GO:0004674 protein serine/threonine kinase activity IEP Enrichment
MF GO:0005315 inorganic phosphate transmembrane transporter activity IEP Enrichment
MF GO:0005515 protein binding IEP Enrichment
MF GO:0005524 ATP binding IEP Enrichment
BP GO:0006139 nucleobase-containing compound metabolic process IEP Enrichment
BP GO:0006265 DNA topological change IEP Enrichment
BP GO:0006399 tRNA metabolic process IEP Enrichment
BP GO:0006605 protein targeting IEP Enrichment
BP GO:0006612 protein targeting to membrane IEP Enrichment
BP GO:0006613 cotranslational protein targeting to membrane IEP Enrichment
BP GO:0006614 SRP-dependent cotranslational protein targeting to membrane IEP Enrichment
BP GO:0006725 cellular aromatic compound metabolic process IEP Enrichment
BP GO:0006817 phosphate ion transport IEP Enrichment
MF GO:0008094 ATPase, acting on DNA IEP Enrichment
MF GO:0008312 7S RNA binding IEP Enrichment
MF GO:0008519 ammonium transmembrane transporter activity IEP Enrichment
MF GO:0008641 ubiquitin-like modifier activating enzyme activity IEP Enrichment
MF GO:0009982 pseudouridine synthase activity IEP Enrichment
BP GO:0015696 ammonium transport IEP Enrichment
BP GO:0016070 RNA metabolic process IEP Enrichment
MF GO:0016853 isomerase activity IEP Enrichment
MF GO:0016874 ligase activity IEP Enrichment
MF GO:0016877 ligase activity, forming carbon-sulfur bonds IEP Enrichment
MF GO:0017076 purine nucleotide binding IEP Enrichment
MF GO:0017150 tRNA dihydrouridine synthase activity IEP Enrichment
MF GO:0030554 adenyl nucleotide binding IEP Enrichment
MF GO:0032553 ribonucleotide binding IEP Enrichment
MF GO:0032555 purine ribonucleotide binding IEP Enrichment
MF GO:0032559 adenyl ribonucleotide binding IEP Enrichment
BP GO:0033365 protein localization to organelle IEP Enrichment
BP GO:0034470 ncRNA processing IEP Enrichment
BP GO:0034613 cellular protein localization IEP Enrichment
BP GO:0034660 ncRNA metabolic process IEP Enrichment
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Enrichment
MF GO:0036094 small molecule binding IEP Enrichment
MF GO:0043167 ion binding IEP Enrichment
MF GO:0043168 anion binding IEP Enrichment
BP GO:0045047 protein targeting to ER IEP Enrichment
BP GO:0046483 heterocycle metabolic process IEP Enrichment
CC GO:0048500 signal recognition particle IEP Enrichment
BP GO:0051668 localization within membrane IEP Enrichment
BP GO:0070727 cellular macromolecule localization IEP Enrichment
BP GO:0070972 protein localization to endoplasmic reticulum IEP Enrichment
BP GO:0071103 DNA conformation change IEP Enrichment
BP GO:0071705 nitrogen compound transport IEP Enrichment
BP GO:0072594 establishment of protein localization to organelle IEP Enrichment
BP GO:0072599 establishment of protein localization to endoplasmic reticulum IEP Enrichment
BP GO:0072657 protein localization to membrane IEP Enrichment
BP GO:0090150 establishment of protein localization to membrane IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
MF GO:0097367 carbohydrate derivative binding IEP Enrichment
MF GO:0140097 catalytic activity, acting on DNA IEP Enrichment
MF GO:0140098 catalytic activity, acting on RNA IEP Enrichment
MF GO:0140101 catalytic activity, acting on a tRNA IEP Enrichment
MF GO:1901265 nucleoside phosphate binding IEP Enrichment
BP GO:1901360 organic cyclic compound metabolic process IEP Enrichment
InterPro domains Description Start Stop
IPR005324 Ribosomal_S5_C 279 340
IPR013810 Ribosomal_S5_N 200 264
No external refs found!