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  5. Cz10g25240.t1

Cz10g25240.t1


Description : Lysine-specific demethylase-like domain; Zinc finger, C5HC2-type; ARID DNA-binding domain; JmjN domain; JmjC domain; Zinc finger, PHD-finger [Interproscan].


Gene families : OG_01_0000339 (OrthoFinder) Phylogenetic Tree(s): OG0000339_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cz10g25240.t1
Cluster HCCA: Cluster_39

Target Alias Description ECC score Gene Family Method Actions
EOD41865 No alias ARID DNA-binding domain; JmjN domain [Interproscan]. 0.02 OrthoFinder
PTI_16G00990.1 No alias JmjC domain [Interproscan]. 0.02 OrthoFinder
TP02G00930.1 No alias JmjC domain; Zinc finger, C5HC2-type; JmjN domain [Interproscan]. 0.02 OrthoFinder
Transcript_contig_54742 54742 JmjN domain; JmjC domain [Interproscan]. 0.02 OrthoFinder
lcl|BLLF01000060.1_cds_GFH06869.1_1346 HaLaN_01579, GFH06869 JmjC domain [Interproscan]. 0.02 OrthoFinder
lcl|BLLF01000668.1_cds_GFH13931.1_8408 HaLaN_09898, GFH13931 JmjC domain [Interproscan]. 0.01 OrthoFinder
lcl|BLLF01005550.1_cds_GFH31345.1_25822 HaLaN_30370, GFH31345 Jumonji domain-containing protein 0.02 OrthoFinder
lcl|VRMN01000007.1_cds_KAA8493440.1_9741 KAA8493440 Hypothetical protein 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Enrichment
MF GO:0000295 adenine nucleotide transmembrane transporter activity IEP Enrichment
BP GO:0000375 RNA splicing, via transesterification reactions IEP Enrichment
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Enrichment
BP GO:0000398 mRNA splicing, via spliceosome IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0004843 thiol-dependent deubiquitinase IEP Enrichment
MF GO:0005346 purine ribonucleotide transmembrane transporter activity IEP Enrichment
MF GO:0005347 ATP transmembrane transporter activity IEP Enrichment
MF GO:0005471 ATP:ADP antiporter activity IEP Enrichment
MF GO:0005515 protein binding IEP Enrichment
MF GO:0005524 ATP binding IEP Enrichment
BP GO:0006753 nucleoside phosphate metabolic process IEP Enrichment
BP GO:0006862 nucleotide transport IEP Enrichment
BP GO:0007165 signal transduction IEP Enrichment
MF GO:0008242 omega peptidase activity IEP Enrichment
MF GO:0008270 zinc ion binding IEP Enrichment
MF GO:0008514 organic anion transmembrane transporter activity IEP Enrichment
BP GO:0009117 nucleotide metabolic process IEP Enrichment
BP GO:0009165 nucleotide biosynthetic process IEP Enrichment
BP GO:0009187 cyclic nucleotide metabolic process IEP Enrichment
BP GO:0009190 cyclic nucleotide biosynthetic process IEP Enrichment
MF GO:0015075 ion transmembrane transporter activity IEP Enrichment
MF GO:0015078 proton transmembrane transporter activity IEP Enrichment
MF GO:0015215 nucleotide transmembrane transporter activity IEP Enrichment
MF GO:0015216 purine nucleotide transmembrane transporter activity IEP Enrichment
MF GO:0015217 ADP transmembrane transporter activity IEP Enrichment
MF GO:0015291 secondary active transmembrane transporter activity IEP Enrichment
MF GO:0015297 antiporter activity IEP Enrichment
MF GO:0015298 solute:cation antiporter activity IEP Enrichment
MF GO:0015299 solute:proton antiporter activity IEP Enrichment
MF GO:0015301 anion:anion antiporter activity IEP Enrichment
MF GO:0015605 organophosphate ester transmembrane transporter activity IEP Enrichment
BP GO:0015748 organophosphate ester transport IEP Enrichment
BP GO:0016579 protein deubiquitination IEP Enrichment
BP GO:0017038 protein import IEP Enrichment
MF GO:0017069 snRNA binding IEP Enrichment
MF GO:0017070 U6 snRNA binding IEP Enrichment
MF GO:0017076 purine nucleotide binding IEP Enrichment
BP GO:0018130 heterocycle biosynthetic process IEP Enrichment
BP GO:0019438 aromatic compound biosynthetic process IEP Enrichment
BP GO:0019637 organophosphate metabolic process IEP Enrichment
MF GO:0019783 ubiquitin-like protein-specific protease activity IEP Enrichment
MF GO:0022804 active transmembrane transporter activity IEP Enrichment
MF GO:0022853 active ion transmembrane transporter activity IEP Enrichment
MF GO:0022890 inorganic cation transmembrane transporter activity IEP Enrichment
MF GO:0030554 adenyl nucleotide binding IEP Enrichment
MF GO:0030623 U5 snRNA binding IEP Enrichment
MF GO:0032553 ribonucleotide binding IEP Enrichment
MF GO:0032555 purine ribonucleotide binding IEP Enrichment
MF GO:0032559 adenyl ribonucleotide binding IEP Enrichment
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP Enrichment
BP GO:0035556 intracellular signal transduction IEP Enrichment
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Enrichment
MF GO:0036094 small molecule binding IEP Enrichment
BP GO:0042558 pteridine-containing compound metabolic process IEP Enrichment
MF GO:0043167 ion binding IEP Enrichment
MF GO:0043168 anion binding IEP Enrichment
BP GO:0050789 regulation of biological process IEP Enrichment
BP GO:0050794 regulation of cellular process IEP Enrichment
BP GO:0051726 regulation of cell cycle IEP Enrichment
BP GO:0055086 nucleobase-containing small molecule metabolic process IEP Enrichment
BP GO:0065007 biological regulation IEP Enrichment
BP GO:0070646 protein modification by small protein removal IEP Enrichment
BP GO:0070647 protein modification by small protein conjugation or removal IEP Enrichment
BP GO:0090407 organophosphate biosynthetic process IEP Enrichment
MF GO:0097367 carbohydrate derivative binding IEP Enrichment
MF GO:0101005 deubiquitinase activity IEP Enrichment
MF GO:0140323 solute:anion antiporter activity IEP Enrichment
MF GO:1901265 nucleoside phosphate binding IEP Enrichment
BP GO:1901293 nucleoside phosphate biosynthetic process IEP Enrichment
BP GO:1901362 organic cyclic compound biosynthetic process IEP Enrichment
InterPro domains Description Start Stop
IPR004198 Znf_C5HC2 768 818
IPR019787 Znf_PHD-finger 291 337
IPR013637 Lys_sp_deMease-like_dom 1542 1680
IPR013637 Lys_sp_deMease-like_dom 1919 2013
IPR013637 Lys_sp_deMease-like_dom 2285 2447
IPR013637 Lys_sp_deMease-like_dom 1692 1958
IPR003347 JmjC_dom 560 676
IPR003349 JmjN 20 53
IPR001606 ARID_dom 89 174
No external refs found!