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  5. Cpa|evm.model.tig00001049.16

Cpa|evm.model.tig00001049.16 (tig00001049_g6665.t1)


Aliases : tig00001049_g6665.t1

Description : RNA processing.RNA modification.rRNA/tRNA methylation.C/D small nucleolar ribonucleoprotein (snoRNP) rRNA methylation complex.Nop1/fibrillarin methyltransferase component


Gene families : OG_01_0002387 (OrthoFinder) Phylogenetic Tree(s): OG0002387_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00001049.16
Cluster HCCA: Cluster_45

Target Alias Description ECC score Gene Family Method Actions
Cre02.g077300 30785723, NOP1 RNA processing.RNA modification.rRNA/tRNA... 0.08 OrthoFinder
Cz10g07040.t1 No alias Fibrillarin [Interproscan]. 0.08 OrthoFinder
Dusal.0325s00010.1 33191960 Fibrillarin [Interproscan]. 0.04 OrthoFinder
EOD07048 No alias Ubiquitin-like domain; Fibrillarin [Interproscan]. 0.05 OrthoFinder
OT_07G01210.1 No alias Fibrillarin [Interproscan]. 0.02 OrthoFinder
PTI_20G00150.1 No alias Fibrillarin [Interproscan]. 0.03 OrthoFinder
Sro1226_g254200.1 Contig1389.g12811 RRNA 2'-O-methyltransferase fibrillarin 0.05 OrthoFinder
TP13G01650.1 No alias Fibrillarin [Interproscan]. 0.04 OrthoFinder
Transcript_contig_54582 54582 Fibrillarin [Interproscan]. 0.07 OrthoFinder
Vocar.0030s0076.1 32894520 Fibrillarin [Interproscan]. 0.04 OrthoFinder
XM_002499943.1 MICPUN_97046, 97046 Fibrillarin [Interproscan]. 0.04 OrthoFinder
lcl|BLLF01000026.1_cds_GFH06193.1_670 HaLaN_00783, GFH06193 Fibrillarin [Interproscan]. 0.06 OrthoFinder
lcl|BLLF01000255.1_cds_GFH09702.1_4179 HaLaN_04892, GFH09702 Mediator of RNA polymerase II transcription subunit 36a 0.06 OrthoFinder
lcl|LHPG02000004.1_cds_PRW59290.1_6872 PRW59290 RRNA 2-O-methyltransferase fibrillarin 0.03 OrthoFinder
lcl|VRMN01000013.1_cds_KAA8491508.1_6318 KAA8491508 Putative mediator of RNA polymerase II transcription subunit 36b 0.05 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
BP GO:0006364 rRNA processing IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEP Enrichment
MF GO:0003743 translation initiation factor activity IEP Enrichment
MF GO:0004540 ribonuclease activity IEP Enrichment
MF GO:0004809 tRNA (guanine-N2-)-methyltransferase activity IEP Enrichment
MF GO:0005515 protein binding IEP Enrichment
CC GO:0005730 nucleolus IEP Enrichment
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP Enrichment
BP GO:0006351 transcription, DNA-templated IEP Enrichment
BP GO:0006413 translational initiation IEP Enrichment
MF GO:0008135 translation factor activity, RNA binding IEP Enrichment
MF GO:0008170 N-methyltransferase activity IEP Enrichment
MF GO:0008173 RNA methyltransferase activity IEP Enrichment
MF GO:0008175 tRNA methyltransferase activity IEP Enrichment
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP Enrichment
BP GO:0009059 macromolecule biosynthetic process IEP Enrichment
MF GO:0016423 tRNA (guanine) methyltransferase activity IEP Enrichment
CC GO:0030684 preribosome IEP Enrichment
CC GO:0032040 small-subunit processome IEP Enrichment
BP GO:0032774 RNA biosynthetic process IEP Enrichment
BP GO:0034645 cellular macromolecule biosynthetic process IEP Enrichment
MF GO:0045182 translation regulator activity IEP Enrichment
MF GO:0090079 translation regulator activity, nucleic acid binding IEP Enrichment
BP GO:0097659 nucleic acid-templated transcription IEP Enrichment
MF GO:0140098 catalytic activity, acting on RNA IEP Enrichment
CC GO:1990904 ribonucleoprotein complex IEP Enrichment
InterPro domains Description Start Stop
IPR000692 Fibrillarin 66 262
No external refs found!