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  5. Cpa|evm.model.tig00001042.1

Cpa|evm.model.tig00001042.1 (tig00001042_g6579.t1)


Aliases : tig00001042_g6579.t1

Description : Ribonucleoside-diphosphate reductase large subunit OS=Arabidopsis thaliana


Gene families : OG_01_0001485 (OrthoFinder) Phylogenetic Tree(s): OG0001485_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cpa|evm.model.tig00001042.1
Cluster HCCA: Cluster_49

Target Alias Description ECC score Gene Family Method Actions
Cre12.g492950 30792262, RIR1 Nucleotide metabolism.deoxynucleotide... 0.03 OrthoFinder
Cz10g19230.t1 No alias ATP-cone domain; Ribonucleotide reductase large subunit,... 0.02 OrthoFinder
Dusal.0285s00017.1 33192879 Ribonucleotide reductase large subunit, C-terminal;... 0.03 OrthoFinder
EOD13106 No alias Ribonucleotide reductase large subunit, C-terminal... 0.03 OrthoFinder
Sro399_g134840.1 Contig279.g3611 Ribonucleoside-diphosphate reductase large 0.02 OrthoFinder
lcl|BLLF01000014.1_cds_GFH05936.1_413 HaLaN_00482, GFH05936 Ribonucleoside-diphosphate reductase 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0004748 ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
BP GO:0006260 DNA replication IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003677 DNA binding IEP Enrichment
MF GO:0003909 DNA ligase activity IEP Enrichment
MF GO:0003910 DNA ligase (ATP) activity IEP Enrichment
MF GO:0003916 DNA topoisomerase activity IEP Enrichment
MF GO:0003918 DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity IEP Enrichment
BP GO:0006139 nucleobase-containing compound metabolic process IEP Enrichment
BP GO:0006259 DNA metabolic process IEP Enrichment
BP GO:0006265 DNA topological change IEP Enrichment
BP GO:0006325 chromatin organization IEP Enrichment
BP GO:0006334 nucleosome assembly IEP Enrichment
BP GO:0006725 cellular aromatic compound metabolic process IEP Enrichment
BP GO:0006820 anion transport IEP Enrichment
BP GO:0006996 organelle organization IEP Enrichment
MF GO:0008094 ATPase, acting on DNA IEP Enrichment
MF GO:0015098 molybdate ion transmembrane transporter activity IEP Enrichment
MF GO:0015103 inorganic anion transmembrane transporter activity IEP Enrichment
BP GO:0015689 molybdate ion transport IEP Enrichment
BP GO:0015698 inorganic anion transport IEP Enrichment
BP GO:0016043 cellular component organization IEP Enrichment
MF GO:0016462 pyrophosphatase activity IEP Enrichment
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Enrichment
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Enrichment
MF GO:0016853 isomerase activity IEP Enrichment
MF GO:0016886 ligase activity, forming phosphoric ester bonds IEP Enrichment
MF GO:0016887 ATPase IEP Enrichment
MF GO:0017111 nucleoside-triphosphatase activity IEP Enrichment
BP GO:0022607 cellular component assembly IEP Enrichment
BP GO:0034622 cellular protein-containing complex assembly IEP Enrichment
BP GO:0034641 cellular nitrogen compound metabolic process IEP Enrichment
BP GO:0034728 nucleosome organization IEP Enrichment
BP GO:0043933 protein-containing complex subunit organization IEP Enrichment
BP GO:0046483 heterocycle metabolic process IEP Enrichment
BP GO:0051276 chromosome organization IEP Enrichment
BP GO:0065003 protein-containing complex assembly IEP Enrichment
BP GO:0065004 protein-DNA complex assembly IEP Enrichment
BP GO:0071103 DNA conformation change IEP Enrichment
BP GO:0071824 protein-DNA complex subunit organization IEP Enrichment
BP GO:0071840 cellular component organization or biogenesis IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
MF GO:0140097 catalytic activity, acting on DNA IEP Enrichment
BP GO:1901360 organic cyclic compound metabolic process IEP Enrichment
InterPro domains Description Start Stop
IPR013509 RNR_lsu_N 142 212
IPR005144 ATP-cone_dom 1 89
No external refs found!