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  5. Cz07g16060.t1

Cz07g16060.t1


Description : Pre-mRNA-processing-splicing factor 8, U6-snRNA-binding; PROCT domain; JAB1/MPN/MOV34 metalloenzyme domain; PRO8NT domain; PROCN domain; RNA recognition motif, spliceosomal PrP8; PRP8 domain IV core; Pre-mRNA-processing-splicing factor 8, U5-snRNA-binding [Interproscan].


Gene families : OG_01_0001747 (OrthoFinder) Phylogenetic Tree(s): OG0001747_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cz07g16060.t1
Cluster HCCA: Cluster_39

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000093.136 tig00000093_g3562.t1 Pre-mRNA-processing-splicing factor 8A OS=Arabidopsis thaliana 0.02 OrthoFinder
Cpa|evm.model.tig00000093.137 tig00000093_g3562.t1 RNA processing.RNA splicing.U2-type-intron-specific... 0.05 OrthoFinder
Cre01.g016050 30789071, PRP8 RNA processing.RNA splicing.U2-type-intron-specific... 0.02 OrthoFinder
Dusal.0327s00002.1 33200457 Pre-mRNA-processing-splicing factor 8, U5-snRNA-binding;... 0.02 OrthoFinder
EOD24715 No alias PROCT domain; RNA recognition motif, spliceosomal PrP8;... 0.03 OrthoFinder
OT_11G00220.1 No alias Pre-mRNA-processing-splicing factor 8, U6-snRNA-binding;... 0.04 OrthoFinder
PTI_07G01950.1 No alias PROCN domain; Pre-mRNA-processing-splicing factor 8,... 0.02 OrthoFinder
Sro281_g107170.1 Contig3786.g29056 Processing-splicing factor 8 0.03 OrthoFinder
TP02G09170.1 No alias PROCT domain; PROCN domain; RNA recognition motif,... 0.03 OrthoFinder
Transcript_contig_53842 53842 PROCT domain; Pre-mRNA-processing-splicing factor 8,... 0.03 OrthoFinder
lcl|BLLF01000717.1_cds_GFH14366.1_8843 HaLaN_10407, GFH14366 MPN domain-containing protein 0.01 OrthoFinder
lcl|LHPG02000001.1_cds_PRW60964.1_258 PRW60964 Pre-mRNA-processing-splicing factor 8 isoform A 0.03 OrthoFinder

Type GO Term Name Evidence Source
BP GO:0000398 mRNA splicing, via spliceosome IEA Interproscan
MF GO:0003723 RNA binding IEA Interproscan
MF GO:0005515 protein binding IEA Interproscan
MF GO:0017070 U6 snRNA binding IEA Interproscan
MF GO:0030623 U5 snRNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000155 phosphorelay sensor kinase activity IEP Enrichment
BP GO:0000160 phosphorelay signal transduction system IEP Enrichment
MF GO:0000166 nucleotide binding IEP Enrichment
MF GO:0004527 exonuclease activity IEP Enrichment
MF GO:0004673 protein histidine kinase activity IEP Enrichment
MF GO:0004812 aminoacyl-tRNA ligase activity IEP Enrichment
MF GO:0004827 proline-tRNA ligase activity IEP Enrichment
MF GO:0004832 valine-tRNA ligase activity IEP Enrichment
MF GO:0005524 ATP binding IEP Enrichment
CC GO:0005643 nuclear pore IEP Enrichment
CC GO:0005737 cytoplasm IEP Enrichment
BP GO:0006351 transcription, DNA-templated IEP Enrichment
BP GO:0006399 tRNA metabolic process IEP Enrichment
BP GO:0006418 tRNA aminoacylation for protein translation IEP Enrichment
BP GO:0006433 prolyl-tRNA aminoacylation IEP Enrichment
BP GO:0006438 valyl-tRNA aminoacylation IEP Enrichment
BP GO:0006520 cellular amino acid metabolic process IEP Enrichment
BP GO:0007165 signal transduction IEP Enrichment
MF GO:0008270 zinc ion binding IEP Enrichment
BP GO:0009165 nucleotide biosynthetic process IEP Enrichment
BP GO:0009187 cyclic nucleotide metabolic process IEP Enrichment
BP GO:0009190 cyclic nucleotide biosynthetic process IEP Enrichment
BP GO:0009966 regulation of signal transduction IEP Enrichment
BP GO:0010646 regulation of cell communication IEP Enrichment
MF GO:0015075 ion transmembrane transporter activity IEP Enrichment
MF GO:0015078 proton transmembrane transporter activity IEP Enrichment
MF GO:0015291 secondary active transmembrane transporter activity IEP Enrichment
MF GO:0015297 antiporter activity IEP Enrichment
MF GO:0015298 solute:cation antiporter activity IEP Enrichment
MF GO:0015299 solute:proton antiporter activity IEP Enrichment
MF GO:0015318 inorganic molecular entity transmembrane transporter activity IEP Enrichment
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP Enrichment
MF GO:0016775 phosphotransferase activity, nitrogenous group as acceptor IEP Enrichment
MF GO:0016874 ligase activity IEP Enrichment
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP Enrichment
BP GO:0017038 protein import IEP Enrichment
MF GO:0017076 purine nucleotide binding IEP Enrichment
BP GO:0018130 heterocycle biosynthetic process IEP Enrichment
CC GO:0018995 host cellular component IEP Enrichment
BP GO:0019438 aromatic compound biosynthetic process IEP Enrichment
CC GO:0019867 outer membrane IEP Enrichment
MF GO:0022853 active ion transmembrane transporter activity IEP Enrichment
BP GO:0023051 regulation of signaling IEP Enrichment
MF GO:0030554 adenyl nucleotide binding IEP Enrichment
BP GO:0032012 regulation of ARF protein signal transduction IEP Enrichment
MF GO:0032553 ribonucleotide binding IEP Enrichment
MF GO:0032555 purine ribonucleotide binding IEP Enrichment
MF GO:0032559 adenyl ribonucleotide binding IEP Enrichment
CC GO:0033643 host cell part IEP Enrichment
CC GO:0033646 host intracellular part IEP Enrichment
CC GO:0033647 host intracellular organelle IEP Enrichment
CC GO:0033648 host intracellular membrane-bounded organelle IEP Enrichment
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP Enrichment
BP GO:0034660 ncRNA metabolic process IEP Enrichment
BP GO:0035556 intracellular signal transduction IEP Enrichment
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Enrichment
MF GO:0036094 small molecule binding IEP Enrichment
CC GO:0042025 host cell nucleus IEP Enrichment
BP GO:0043038 amino acid activation IEP Enrichment
BP GO:0043039 tRNA aminoacylation IEP Enrichment
MF GO:0043167 ion binding IEP Enrichment
MF GO:0043168 anion binding IEP Enrichment
BP GO:0044281 small molecule metabolic process IEP Enrichment
BP GO:0046578 regulation of Ras protein signal transduction IEP Enrichment
BP GO:0048583 regulation of response to stimulus IEP Enrichment
BP GO:0050789 regulation of biological process IEP Enrichment
BP GO:0050794 regulation of cellular process IEP Enrichment
BP GO:0051056 regulation of small GTPase mediated signal transduction IEP Enrichment
BP GO:0065007 biological regulation IEP Enrichment
MF GO:0097367 carbohydrate derivative binding IEP Enrichment
BP GO:0097659 nucleic acid-templated transcription IEP Enrichment
MF GO:0140098 catalytic activity, acting on RNA IEP Enrichment
MF GO:0140101 catalytic activity, acting on a tRNA IEP Enrichment
MF GO:0140299 small molecule sensor activity IEP Enrichment
MF GO:1901265 nucleoside phosphate binding IEP Enrichment
BP GO:1901293 nucleoside phosphate biosynthetic process IEP Enrichment
BP GO:1901362 organic cyclic compound biosynthetic process IEP Enrichment
BP GO:1902531 regulation of intracellular signal transduction IEP Enrichment
InterPro domains Description Start Stop
IPR019581 Prp8_U5-snRNA-bd 1263 1396
IPR000555 JAMM/MPN+_dom 2155 2251
IPR019582 RRM_spliceosomal_PrP8 1040 1129
IPR012591 PRO8NT 85 236
IPR012592 PROCN 449 854
IPR012984 PROCT 2265 2382
IPR019580 Prp8_U6-snRNA-bd 1495 1653
IPR021983 PRP8_domainIV 1813 2042
No external refs found!