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  5. Cz06g14110.t1

Cz06g14110.t1


Description : Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain; mRNA splicing factor SYF2 [Interproscan].


Gene families : OG_01_0000026 (OrthoFinder) Phylogenetic Tree(s): OG0000026_tree

Sequence : coding (download), protein (download)


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Type Description Actions
Neighborhood HRR: Cz06g14110.t1
Cluster HCCA: Cluster_132

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00020693.8 tig00020693_g13013.t1 RNA processing.RNA splicing.spliceosome-associated... 0.03 OrthoFinder
Cpa|evm.model.tig00020904.49 tig00020904_g15181.t1 Protein modification.protein folding and quality... 0.02 OrthoFinder
Cre01.g037400 30789223 Protein modification.protein folding and quality... 0.03 OrthoFinder
Dusal.0088s00011.1 33203544 Cyclophilin-type peptidyl-prolyl cis-trans isomerase... 0.02 OrthoFinder
Dusal.0574s00008.1 33187461 Cyclophilin-type peptidyl-prolyl cis-trans isomerase... 0.02 OrthoFinder
OT_03G04380.1 No alias Cyclophilin-type peptidyl-prolyl cis-trans isomerase... 0.04 OrthoFinder
OT_07G03420.1 No alias Cyclophilin-type peptidyl-prolyl cis-trans isomerase... 0.02 OrthoFinder
OT_10G01080.1 No alias Cyclophilin-type peptidyl-prolyl cis-trans isomerase... 0.02 OrthoFinder
Sro146_g067660.1 Contig2363.g19456 Cis-trans isomerase 0.01 OrthoFinder
SymbC1.scaffold2487.2 2487.2 Divalent ion tolerance protein, CutA; Peptidyl-prolyl... 0.01 OrthoFinder
TP17G01660.1 No alias Cyclophilin-type peptidyl-prolyl cis-trans isomerase... 0.02 OrthoFinder
Transcript_contig_54712 54712 Cyclophilin-type peptidyl-prolyl cis-trans isomerase... 0.01 OrthoFinder
Transcript_contig_79452 79452 Cyclophilin-type peptidyl-prolyl cis-trans isomerase... 0.02 OrthoFinder
XM_002508067.1 MICPUN_60515, 60515 Cyclophilin-type peptidyl-prolyl cis-trans isomerase... 0.05 OrthoFinder
XM_003055596.1 MicpuC2_8202, 8202 Cyclophilin-type peptidyl-prolyl cis-trans isomerase... 0.02 OrthoFinder
XM_003058339.1 MicpuC2_17355, 17355 Cyclophilin-type peptidyl-prolyl cis-trans isomerase... 0.02 OrthoFinder
XM_003061979.1 MicpuC2_7978, 7978 mRNA splicing factor SYF2 [Interproscan]. 0.03 OrthoFinder
lcl|LHPG02000003.1_cds_PRW59726.1_6242 PRW59726 Peptidyl-prolyl cis-trans isomerase CYP19-3 isoform X2 0.02 OrthoFinder
lcl|LHPG02000009.1_cds_PRW56328.1_10312 PRW56328 Cyclophilin 0.02 OrthoFinder

Type GO Term Name Evidence Source
BP GO:0000413 protein peptidyl-prolyl isomerization IEA Interproscan
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Enrichment
BP GO:0000375 RNA splicing, via transesterification reactions IEP Enrichment
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Enrichment
BP GO:0000398 mRNA splicing, via spliceosome IEP Enrichment
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003729 mRNA binding IEP Enrichment
MF GO:0005488 binding IEP Enrichment
MF GO:0005524 ATP binding IEP Enrichment
MF GO:0005525 GTP binding IEP Enrichment
CC GO:0005685 U1 snRNP IEP Enrichment
CC GO:0005737 cytoplasm IEP Enrichment
BP GO:0006376 mRNA splice site selection IEP Enrichment
BP GO:0006790 sulfur compound metabolic process IEP Enrichment
MF GO:0008134 transcription factor binding IEP Enrichment
BP GO:0008380 RNA splicing IEP Enrichment
MF GO:0015035 protein-disulfide reductase activity IEP Enrichment
MF GO:0015036 disulfide oxidoreductase activity IEP Enrichment
BP GO:0016043 cellular component organization IEP Enrichment
BP GO:0016226 iron-sulfur cluster assembly IEP Enrichment
MF GO:0016887 ATPase IEP Enrichment
MF GO:0017025 TBP-class protein binding IEP Enrichment
MF GO:0017076 purine nucleotide binding IEP Enrichment
MF GO:0019001 guanyl nucleotide binding IEP Enrichment
MF GO:0019899 enzyme binding IEP Enrichment
BP GO:0022607 cellular component assembly IEP Enrichment
BP GO:0022618 ribonucleoprotein complex assembly IEP Enrichment
CC GO:0030532 small nuclear ribonucleoprotein complex IEP Enrichment
MF GO:0030554 adenyl nucleotide binding IEP Enrichment
BP GO:0031163 metallo-sulfur cluster assembly IEP Enrichment
MF GO:0031625 ubiquitin protein ligase binding IEP Enrichment
MF GO:0032553 ribonucleotide binding IEP Enrichment
MF GO:0032555 purine ribonucleotide binding IEP Enrichment
MF GO:0032559 adenyl ribonucleotide binding IEP Enrichment
MF GO:0032561 guanyl ribonucleotide binding IEP Enrichment
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Enrichment
MF GO:0036094 small molecule binding IEP Enrichment
MF GO:0043167 ion binding IEP Enrichment
MF GO:0043168 anion binding IEP Enrichment
MF GO:0044389 ubiquitin-like protein ligase binding IEP Enrichment
BP GO:0071826 ribonucleoprotein complex subunit organization IEP Enrichment
BP GO:0071840 cellular component organization or biogenesis IEP Enrichment
MF GO:0097159 organic cyclic compound binding IEP Enrichment
MF GO:0097367 carbohydrate derivative binding IEP Enrichment
CC GO:0097525 spliceosomal snRNP complex IEP Enrichment
CC GO:0120114 Sm-like protein family complex IEP Enrichment
MF GO:0140296 general transcription initiation factor binding IEP Enrichment
MF GO:1901265 nucleoside phosphate binding IEP Enrichment
MF GO:1901363 heterocyclic compound binding IEP Enrichment
InterPro domains Description Start Stop
IPR013260 mRNA_splic_SYF2 377 513
IPR002130 Cyclophilin-type_PPIase_dom 12 173
No external refs found!