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  5. Cz06g06080.t1

Cz06g06080.t1


Description : 40S ribosomal protein S4, C-terminal domain; RNA-binding S4 domain; Ribosomal protein S4e, central region; KOW [Interproscan].


Gene families : OG_01_0003378 (OrthoFinder) Phylogenetic Tree(s): OG0003378_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cz06g06080.t1
Cluster HCCA: Cluster_80

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00021433.38 tig00021433_g21290.t1 40S ribosomal protein S4 OS=Oryza sativa subsp. japonica 0.12 OrthoFinder
Cre06.g308250 30778562, RPS4 Protein biosynthesis.cytosolic ribosome.small subunit... 0.18 OrthoFinder
Dusal.0521s00005.1 33197389 40S ribosomal protein S4, C-terminal domain; Ribosomal... 0.03 OrthoFinder
EOD21843 No alias 40S ribosomal protein S4 [Ensembl]. 0.11 OrthoFinder
OT_17G01340.1 No alias 40S ribosomal protein S4, C-terminal domain; Ribosomal... 0.14 OrthoFinder
PTI_01G02680.1 No alias Ribosomal protein S4e, N-terminal; KOW; 40S ribosomal... 0.14 OrthoFinder
Sro611_g175310.1 Contig1882.g16412 40S ribosomal protein S4 0.13 OrthoFinder
TP02G09320.1 No alias 40S ribosomal protein S4, C-terminal domain; Ribosomal... 0.11 OrthoFinder
Vocar.0009s0158.1 32893178 Ribosomal protein S4e, central region; RNA-binding S4... 0.13 OrthoFinder
XM_002502201.1 MICPUN_90851, 90851 KOW; 40S ribosomal protein S4, C-terminal domain;... 0.1 OrthoFinder
XM_003063958.1 MicpuC2_36856, 36856 40S ribosomal protein S4, C-terminal domain; Ribosomal... 0.08 OrthoFinder
lcl|LHPG02000008.1_cds_PRW56747.1_9789 PRW56747 40S ribosomal X isoform 0.05 OrthoFinder
lcl|VRMN01000009.1_cds_KAA8492541.1_9234 KAA8492541 40S ribosomal protein S4 0.07 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEP Enrichment
MF GO:0004017 adenylate kinase activity IEP Enrichment
MF GO:0004520 endodeoxyribonuclease activity IEP Enrichment
MF GO:0004531 deoxyribonuclease II activity IEP Enrichment
MF GO:0004536 deoxyribonuclease activity IEP Enrichment
MF GO:0005198 structural molecule activity IEP Enrichment
CC GO:0005575 cellular_component IEP Enrichment
CC GO:0005741 mitochondrial outer membrane IEP Enrichment
CC GO:0005840 ribosome IEP Enrichment
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP Enrichment
BP GO:0006399 tRNA metabolic process IEP Enrichment
BP GO:0006412 translation IEP Enrichment
BP GO:0006518 peptide metabolic process IEP Enrichment
BP GO:0006807 nitrogen compound metabolic process IEP Enrichment
MF GO:0008097 5S rRNA binding IEP Enrichment
BP GO:0008150 biological_process IEP Enrichment
BP GO:0008152 metabolic process IEP Enrichment
BP GO:0009058 biosynthetic process IEP Enrichment
BP GO:0009059 macromolecule biosynthetic process IEP Enrichment
BP GO:0009451 RNA modification IEP Enrichment
BP GO:0009987 cellular process IEP Enrichment
MF GO:0016763 pentosyltransferase activity IEP Enrichment
MF GO:0016776 phosphotransferase activity, phosphate group as acceptor IEP Enrichment
MF GO:0016889 endodeoxyribonuclease activity, producing 3'-phosphomonoesters IEP Enrichment
MF GO:0016894 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 3'-phosphomonoesters IEP Enrichment
MF GO:0019205 nucleobase-containing compound kinase activity IEP Enrichment
BP GO:0019538 protein metabolic process IEP Enrichment
MF GO:0019843 rRNA binding IEP Enrichment
CC GO:0019867 outer membrane IEP Enrichment
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Enrichment
CC GO:0031966 mitochondrial membrane IEP Enrichment
CC GO:0031968 organelle outer membrane IEP Enrichment
BP GO:0034641 cellular nitrogen compound metabolic process IEP Enrichment
BP GO:0034645 cellular macromolecule biosynthetic process IEP Enrichment
BP GO:0042254 ribosome biogenesis IEP Enrichment
BP GO:0043043 peptide biosynthetic process IEP Enrichment
BP GO:0043170 macromolecule metabolic process IEP Enrichment
CC GO:0043226 organelle IEP Enrichment
CC GO:0043228 non-membrane-bounded organelle IEP Enrichment
CC GO:0043229 intracellular organelle IEP Enrichment
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Enrichment
BP GO:0043603 cellular amide metabolic process IEP Enrichment
BP GO:0043604 amide biosynthetic process IEP Enrichment
BP GO:0044085 cellular component biogenesis IEP Enrichment
BP GO:0044237 cellular metabolic process IEP Enrichment
BP GO:0044238 primary metabolic process IEP Enrichment
BP GO:0044249 cellular biosynthetic process IEP Enrichment
BP GO:0044260 cellular macromolecule metabolic process IEP Enrichment
BP GO:0044267 cellular protein metabolic process IEP Enrichment
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Enrichment
MF GO:0050145 nucleoside monophosphate kinase activity IEP Enrichment
BP GO:0071704 organic substance metabolic process IEP Enrichment
CC GO:0098588 bounding membrane of organelle IEP Enrichment
CC GO:0110165 cellular anatomical entity IEP Enrichment
BP GO:1901564 organonitrogen compound metabolic process IEP Enrichment
BP GO:1901566 organonitrogen compound biosynthetic process IEP Enrichment
BP GO:1901576 organic substance biosynthetic process IEP Enrichment
InterPro domains Description Start Stop
IPR005824 KOW 154 187
IPR032277 40S_S4_C 188 234
IPR002942 S4_RNA-bd 30 66
IPR013845 Ribosomal_S4e_central_region 71 145
No external refs found!