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  5. Cz05g20150.t1

Cz05g20150.t1


Description : Glutathione S-transferase, C-terminal; Aminoacyl-tRNA synthetase, class Ia; Valyl-tRNA synthetase, tRNA-binding arm; Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding [Interproscan].


Gene families : OG_01_0000866 (OrthoFinder) Phylogenetic Tree(s): OG0000866_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cz05g20150.t1
Cluster HCCA: Cluster_39

Target Alias Description ECC score Gene Family Method Actions
Cre07.g350500 30774357 Protein biosynthesis.aminoacyl-tRNA synthetase... 0.04 OrthoFinder
Cre12.g537100 30793066 Protein biosynthesis.aminoacyl-tRNA synthetase... 0.04 OrthoFinder
Dusal.0452s00014.1 33191422 Aminoacyl-tRNA synthetase, class Ia [Interproscan]. 0.08 OrthoFinder
EOD05767 No alias Putative valyl-tRNA synthetase [Ensembl]. 0.07 OrthoFinder
EOD17893 No alias Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase,... 0.02 OrthoFinder
OT_03G02900.1 No alias Aminoacyl-tRNA synthetase, class Ia;... 0.08 OrthoFinder
OT_08G03790.1 No alias Aminoacyl-tRNA synthetase, class Ia;... 0.04 OrthoFinder
PTI_01G08390.1 No alias Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase,... 0.05 OrthoFinder
PTI_13G01280.1 No alias Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase,... 0.01 OrthoFinder
Sro408_g136830.1 Contig3193.g25218 Valine--tRNA ligase (Fragment) 0.06 OrthoFinder
Sro427_g140590.1 Contig2653.g21430 Valine--tRNA ligase 0.02 OrthoFinder
TP18G02600.1 No alias Aminoacyl-tRNA synthetase, class Ia;... 0.05 OrthoFinder
Transcript_contig_89410 89410 Aminoacyl-tRNA synthetase, class Ia; Glutathione... 0.05 OrthoFinder
Vocar.0034s0041.1 32893008 Aminoacyl-tRNA synthetase, class Ia;... 0.03 OrthoFinder
XM_002501649.1 MICPUN_96323, 96323 Valyl-tRNA synthetase, tRNA-binding arm; Aminoacyl-tRNA... 0.07 OrthoFinder
XM_003058944.1 MicpuC2_47388, 47388 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase,... 0.02 OrthoFinder
XM_003062580.1 MicpuC2_45875, 45875 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase,... 0.03 OrthoFinder
lcl|BLLF01000439.1_cds_GFH11825.1_6302 HaLaN_07391, GFH11825 GST C-terminal domain-containing protein 0.03 OrthoFinder
lcl|BLLF01000476.1_cds_GFH12175.1_6652 HaLaN_07812, GFH12175 Aminoacyl-tRNA synthetase, class Ia [Interproscan]. 0.02 OrthoFinder
lcl|LHPG02000008.1_cds_PRW56769.1_9481 PRW56769 Valine-tRNA ligase isoform A 0.07 OrthoFinder
lcl|LHPG02000018.1_cds_PRW33017.1_3695 PRW33017 Valyl-tRNA synthetase 0.03 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEA Interproscan
MF GO:0004812 aminoacyl-tRNA ligase activity IEA Interproscan
MF GO:0004832 valine-tRNA ligase activity IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
CC GO:0005737 cytoplasm IEA Interproscan
BP GO:0006418 tRNA aminoacylation for protein translation IEA Interproscan
BP GO:0006438 valyl-tRNA aminoacylation IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEP Enrichment
BP GO:0000375 RNA splicing, via transesterification reactions IEP Enrichment
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Enrichment
BP GO:0000398 mRNA splicing, via spliceosome IEP Enrichment
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP Enrichment
BP GO:0002097 tRNA wobble base modification IEP Enrichment
BP GO:0002098 tRNA wobble uridine modification IEP Enrichment
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Enrichment
MF GO:0004175 endopeptidase activity IEP Enrichment
MF GO:0004222 metalloendopeptidase activity IEP Enrichment
MF GO:0004386 helicase activity IEP Enrichment
MF GO:0004486 methylenetetrahydrofolate dehydrogenase [NAD(P)+] activity IEP Enrichment
MF GO:0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity IEP Enrichment
MF GO:0004813 alanine-tRNA ligase activity IEP Enrichment
MF GO:0004814 arginine-tRNA ligase activity IEP Enrichment
MF GO:0004820 glycine-tRNA ligase activity IEP Enrichment
MF GO:0004827 proline-tRNA ligase activity IEP Enrichment
MF GO:0005525 GTP binding IEP Enrichment
CC GO:0005730 nucleolus IEP Enrichment
BP GO:0006351 transcription, DNA-templated IEP Enrichment
BP GO:0006396 RNA processing IEP Enrichment
BP GO:0006401 RNA catabolic process IEP Enrichment
BP GO:0006402 mRNA catabolic process IEP Enrichment
BP GO:0006419 alanyl-tRNA aminoacylation IEP Enrichment
BP GO:0006420 arginyl-tRNA aminoacylation IEP Enrichment
BP GO:0006426 glycyl-tRNA aminoacylation IEP Enrichment
BP GO:0006433 prolyl-tRNA aminoacylation IEP Enrichment
BP GO:0006508 proteolysis IEP Enrichment
BP GO:0006886 intracellular protein transport IEP Enrichment
MF GO:0008094 ATPase, acting on DNA IEP Enrichment
MF GO:0008134 transcription factor binding IEP Enrichment
MF GO:0008233 peptidase activity IEP Enrichment
MF GO:0008237 metallopeptidase activity IEP Enrichment
BP GO:0009451 RNA modification IEP Enrichment
CC GO:0009507 chloroplast IEP Enrichment
CC GO:0009536 plastid IEP Enrichment
BP GO:0010629 negative regulation of gene expression IEP Enrichment
BP GO:0016071 mRNA metabolic process IEP Enrichment
MF GO:0016645 oxidoreductase activity, acting on the CH-NH group of donors IEP Enrichment
MF GO:0016646 oxidoreductase activity, acting on the CH-NH group of donors, NAD or NADP as acceptor IEP Enrichment
MF GO:0016779 nucleotidyltransferase activity IEP Enrichment
MF GO:0017069 snRNA binding IEP Enrichment
MF GO:0017070 U6 snRNA binding IEP Enrichment
MF GO:0019001 guanyl nucleotide binding IEP Enrichment
CC GO:0019867 outer membrane IEP Enrichment
MF GO:0030623 U5 snRNA binding IEP Enrichment
MF GO:0032561 guanyl ribonucleotide binding IEP Enrichment
BP GO:0032774 RNA biosynthetic process IEP Enrichment
CC GO:0033588 elongator holoenzyme complex IEP Enrichment
MF GO:0034062 5'-3' RNA polymerase activity IEP Enrichment
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP Enrichment
MF GO:0070569 uridylyltransferase activity IEP Enrichment
BP GO:0097659 nucleic acid-templated transcription IEP Enrichment
MF GO:0097747 RNA polymerase activity IEP Enrichment
InterPro domains Description Start Stop
IPR004046 GST_C 113 179
IPR019499 Val-tRNA_synth_tRNA-bd 1228 1293
IPR013155 M/V/L/I-tRNA-synth_anticd-bd 1011 1164
IPR002300 aa-tRNA-synth_Ia 341 966
No external refs found!