Description : Glutathione S-transferase, C-terminal; Aminoacyl-tRNA synthetase, class Ia; Valyl-tRNA synthetase, tRNA-binding arm; Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding [Interproscan].
Gene families : OG_01_0000866 (OrthoFinder) Phylogenetic Tree(s): OG0000866_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | HRR: Cz05g20150.t1 | |
Cluster | HCCA: Cluster_39 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
Cre07.g350500 | 30774357 | Protein biosynthesis.aminoacyl-tRNA synthetase... | 0.04 | OrthoFinder | |
Cre12.g537100 | 30793066 | Protein biosynthesis.aminoacyl-tRNA synthetase... | 0.04 | OrthoFinder | |
Dusal.0452s00014.1 | 33191422 | Aminoacyl-tRNA synthetase, class Ia [Interproscan]. | 0.08 | OrthoFinder | |
EOD05767 | No alias | Putative valyl-tRNA synthetase [Ensembl]. | 0.07 | OrthoFinder | |
EOD17893 | No alias | Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase,... | 0.02 | OrthoFinder | |
OT_03G02900.1 | No alias | Aminoacyl-tRNA synthetase, class Ia;... | 0.08 | OrthoFinder | |
OT_08G03790.1 | No alias | Aminoacyl-tRNA synthetase, class Ia;... | 0.04 | OrthoFinder | |
PTI_01G08390.1 | No alias | Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase,... | 0.05 | OrthoFinder | |
PTI_13G01280.1 | No alias | Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase,... | 0.01 | OrthoFinder | |
Sro408_g136830.1 | Contig3193.g25218 | Valine--tRNA ligase (Fragment) | 0.06 | OrthoFinder | |
Sro427_g140590.1 | Contig2653.g21430 | Valine--tRNA ligase | 0.02 | OrthoFinder | |
TP18G02600.1 | No alias | Aminoacyl-tRNA synthetase, class Ia;... | 0.05 | OrthoFinder | |
Transcript_contig_89410 | 89410 | Aminoacyl-tRNA synthetase, class Ia; Glutathione... | 0.05 | OrthoFinder | |
Vocar.0034s0041.1 | 32893008 | Aminoacyl-tRNA synthetase, class Ia;... | 0.03 | OrthoFinder | |
XM_002501649.1 | MICPUN_96323, 96323 | Valyl-tRNA synthetase, tRNA-binding arm; Aminoacyl-tRNA... | 0.07 | OrthoFinder | |
XM_003058944.1 | MicpuC2_47388, 47388 | Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase,... | 0.02 | OrthoFinder | |
XM_003062580.1 | MicpuC2_45875, 45875 | Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase,... | 0.03 | OrthoFinder | |
lcl|BLLF01000439.1_cds_GFH11825.1_6302 | HaLaN_07391, GFH11825 | GST C-terminal domain-containing protein | 0.03 | OrthoFinder | |
lcl|BLLF01000476.1_cds_GFH12175.1_6652 | HaLaN_07812, GFH12175 | Aminoacyl-tRNA synthetase, class Ia [Interproscan]. | 0.02 | OrthoFinder | |
lcl|LHPG02000008.1_cds_PRW56769.1_9481 | PRW56769 | Valine-tRNA ligase isoform A | 0.07 | OrthoFinder | |
lcl|LHPG02000018.1_cds_PRW33017.1_3695 | PRW33017 | Valyl-tRNA synthetase | 0.03 | OrthoFinder |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0000166 | nucleotide binding | IEA | Interproscan |
MF | GO:0004812 | aminoacyl-tRNA ligase activity | IEA | Interproscan |
MF | GO:0004832 | valine-tRNA ligase activity | IEA | Interproscan |
MF | GO:0005524 | ATP binding | IEA | Interproscan |
CC | GO:0005737 | cytoplasm | IEA | Interproscan |
BP | GO:0006418 | tRNA aminoacylation for protein translation | IEA | Interproscan |
BP | GO:0006438 | valyl-tRNA aminoacylation | IEA | Interproscan |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
BP | GO:0000184 | nuclear-transcribed mRNA catabolic process, nonsense-mediated decay | IEP | Enrichment |
BP | GO:0000375 | RNA splicing, via transesterification reactions | IEP | Enrichment |
BP | GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | IEP | Enrichment |
BP | GO:0000398 | mRNA splicing, via spliceosome | IEP | Enrichment |
BP | GO:0000956 | nuclear-transcribed mRNA catabolic process | IEP | Enrichment |
BP | GO:0002097 | tRNA wobble base modification | IEP | Enrichment |
BP | GO:0002098 | tRNA wobble uridine modification | IEP | Enrichment |
MF | GO:0003676 | nucleic acid binding | IEP | Enrichment |
MF | GO:0003723 | RNA binding | IEP | Enrichment |
MF | GO:0003899 | DNA-directed 5'-3' RNA polymerase activity | IEP | Enrichment |
MF | GO:0004175 | endopeptidase activity | IEP | Enrichment |
MF | GO:0004222 | metalloendopeptidase activity | IEP | Enrichment |
MF | GO:0004386 | helicase activity | IEP | Enrichment |
MF | GO:0004486 | methylenetetrahydrofolate dehydrogenase [NAD(P)+] activity | IEP | Enrichment |
MF | GO:0004488 | methylenetetrahydrofolate dehydrogenase (NADP+) activity | IEP | Enrichment |
MF | GO:0004813 | alanine-tRNA ligase activity | IEP | Enrichment |
MF | GO:0004814 | arginine-tRNA ligase activity | IEP | Enrichment |
MF | GO:0004820 | glycine-tRNA ligase activity | IEP | Enrichment |
MF | GO:0004827 | proline-tRNA ligase activity | IEP | Enrichment |
MF | GO:0005525 | GTP binding | IEP | Enrichment |
CC | GO:0005730 | nucleolus | IEP | Enrichment |
BP | GO:0006351 | transcription, DNA-templated | IEP | Enrichment |
BP | GO:0006396 | RNA processing | IEP | Enrichment |
BP | GO:0006401 | RNA catabolic process | IEP | Enrichment |
BP | GO:0006402 | mRNA catabolic process | IEP | Enrichment |
BP | GO:0006419 | alanyl-tRNA aminoacylation | IEP | Enrichment |
BP | GO:0006420 | arginyl-tRNA aminoacylation | IEP | Enrichment |
BP | GO:0006426 | glycyl-tRNA aminoacylation | IEP | Enrichment |
BP | GO:0006433 | prolyl-tRNA aminoacylation | IEP | Enrichment |
BP | GO:0006508 | proteolysis | IEP | Enrichment |
BP | GO:0006886 | intracellular protein transport | IEP | Enrichment |
MF | GO:0008094 | ATPase, acting on DNA | IEP | Enrichment |
MF | GO:0008134 | transcription factor binding | IEP | Enrichment |
MF | GO:0008233 | peptidase activity | IEP | Enrichment |
MF | GO:0008237 | metallopeptidase activity | IEP | Enrichment |
BP | GO:0009451 | RNA modification | IEP | Enrichment |
CC | GO:0009507 | chloroplast | IEP | Enrichment |
CC | GO:0009536 | plastid | IEP | Enrichment |
BP | GO:0010629 | negative regulation of gene expression | IEP | Enrichment |
BP | GO:0016071 | mRNA metabolic process | IEP | Enrichment |
MF | GO:0016645 | oxidoreductase activity, acting on the CH-NH group of donors | IEP | Enrichment |
MF | GO:0016646 | oxidoreductase activity, acting on the CH-NH group of donors, NAD or NADP as acceptor | IEP | Enrichment |
MF | GO:0016779 | nucleotidyltransferase activity | IEP | Enrichment |
MF | GO:0017069 | snRNA binding | IEP | Enrichment |
MF | GO:0017070 | U6 snRNA binding | IEP | Enrichment |
MF | GO:0019001 | guanyl nucleotide binding | IEP | Enrichment |
CC | GO:0019867 | outer membrane | IEP | Enrichment |
MF | GO:0030623 | U5 snRNA binding | IEP | Enrichment |
MF | GO:0032561 | guanyl ribonucleotide binding | IEP | Enrichment |
BP | GO:0032774 | RNA biosynthetic process | IEP | Enrichment |
CC | GO:0033588 | elongator holoenzyme complex | IEP | Enrichment |
MF | GO:0034062 | 5'-3' RNA polymerase activity | IEP | Enrichment |
BP | GO:0034654 | nucleobase-containing compound biosynthetic process | IEP | Enrichment |
MF | GO:0070569 | uridylyltransferase activity | IEP | Enrichment |
BP | GO:0097659 | nucleic acid-templated transcription | IEP | Enrichment |
MF | GO:0097747 | RNA polymerase activity | IEP | Enrichment |
No external refs found! |