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  4. Sequence
  5. Cz05g14030.t1

Cz05g14030.t1


Description : HELP; Anaphase-promoting complex subunit 4, WD40 domain; WD40 repeat [Interproscan].


Gene families : OG_01_0000109 (OrthoFinder) Phylogenetic Tree(s): OG0000109_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cz05g14030.t1
Cluster HCCA: Cluster_46

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000042.33 tig00000042_g15425.t1 No description available 0.03 OrthoFinder
Cpa|evm.model.tig00000042.34 tig00000042_g15425.t1 Calpain-type cysteine protease DEK1 OS=Zea mays 0.03 OrthoFinder
Cpa|evm.model.tig00000178.39 tig00000178_g12750.t1 Cilia- and flagella-associated protein 44... 0.02 OrthoFinder
Cpa|evm.model.tig00000367.43 tig00000367_g24481.t1 No description available 0.02 OrthoFinder
Cre06.g303400 30779939, FAP16 No description available 0.05 OrthoFinder
Cre10.g436000 30790221 No description available 0.02 OrthoFinder
Cz01g41160.t1 No alias WD40 repeat; HELP [Interproscan]. 0.03 OrthoFinder
Dusal.0100s00010.1 33202474 Hypothetical protein 0.02 OrthoFinder
Dusal.0121s00019.1 33195092 PLAT/LH2 domain [Interproscan]. 0.03 OrthoFinder
Dusal.0177s00014.1 33189755 WD40 repeat; PLAT/LH2 domain [Interproscan]. 0.02 OrthoFinder
Dusal.0177s00015.1 33189759 HELP [Interproscan]. 0.02 OrthoFinder
EOD39577 No alias HELP [Interproscan]. 0.04 OrthoFinder
OT_18G00250.1 No alias HELP; WD40 repeat [Interproscan]. 0.03 OrthoFinder
Vocar.0013s0017.1 32896445 WD40 repeat; HELP; Anaphase-promoting complex subunit 4,... 0.06 OrthoFinder
Vocar.0029s0133.1 32887586 WD40 repeat [Interproscan]. 0.07 OrthoFinder
Vocar.0057s0038.1 32894691 PLAT/LH2 domain [Interproscan]. 0.02 OrthoFinder
XM_002501037.1 MICPUN_93773, 93773 HELP; WD40 repeat [Interproscan]. 0.03 OrthoFinder
XM_002501383.1 MICPUN_100113, 100113 WD40 repeat [Interproscan]. 0.02 OrthoFinder
XM_002502455.1 MICPUN_58565, 58565 HELP; PLAT/LH2 domain; WD40 repeat [Interproscan]. 0.04 OrthoFinder
XM_002504527.1 MICPUN_61281, 61281 HELP; WD40 repeat [Interproscan]. 0.02 OrthoFinder
XM_002508893.1 MICPUN_52616, 52616 Hypothetical protein 0.04 OrthoFinder
XM_003055148.1 MicpuC2_6804, 6804 WD40 repeat [Interproscan]. 0.02 OrthoFinder
XM_003058024.1 MicpuC2_57171, 57171 PLAT/LH2 domain; Pleckstrin homology domain [Interproscan]. 0.05 OrthoFinder
XM_003058808.1 MicpuC2_6133, 6133 Hypothetical protein 0.03 OrthoFinder
XM_003062633.1 MicpuC2_4590, 4590 WD40 repeat [Interproscan]. 0.02 OrthoFinder
XM_003063748.1 MicpuC2_42955, 42955 HELP; WD40 repeat [Interproscan]. 0.02 OrthoFinder
XM_003064451.1 MicpuC2_23558, 23558 HELP; Anaphase-promoting complex subunit 4, WD40 domain;... 0.02 OrthoFinder
lcl|BLLF01000936.1_cds_GFH16043.1_10520 HaLaN_12389, GFH16043 Hypothetical protein 0.01 OrthoFinder
lcl|BLLF01007604.1_cds_GFH33025.1_27502 HaLaN_32336, GFH33025 WD_REPEATS_REGION domain-containing protein 0.02 OrthoFinder
lcl|LHPG02000003.1_cds_PRW59716.1_6391 PRW59716 Lipoxygenase homology domain-containing 1 isoform B 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Enrichment
MF GO:0003774 motor activity IEP Enrichment
MF GO:0003777 microtubule motor activity IEP Enrichment
MF GO:0004672 protein kinase activity IEP Enrichment
MF GO:0005215 transporter activity IEP Enrichment
MF GO:0005524 ATP binding IEP Enrichment
BP GO:0006464 cellular protein modification process IEP Enrichment
BP GO:0006468 protein phosphorylation IEP Enrichment
BP GO:0006793 phosphorus metabolic process IEP Enrichment
BP GO:0006796 phosphate-containing compound metabolic process IEP Enrichment
BP GO:0006928 movement of cell or subcellular component IEP Enrichment
BP GO:0007017 microtubule-based process IEP Enrichment
BP GO:0007018 microtubule-based movement IEP Enrichment
MF GO:0008017 microtubule binding IEP Enrichment
MF GO:0008092 cytoskeletal protein binding IEP Enrichment
BP GO:0009987 cellular process IEP Enrichment
MF GO:0015267 channel activity IEP Enrichment
MF GO:0015298 solute:cation antiporter activity IEP Enrichment
MF GO:0015299 solute:proton antiporter activity IEP Enrichment
MF GO:0015631 tubulin binding IEP Enrichment
MF GO:0016301 kinase activity IEP Enrichment
BP GO:0016310 phosphorylation IEP Enrichment
MF GO:0016462 pyrophosphatase activity IEP Enrichment
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP Enrichment
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP Enrichment
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Enrichment
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Enrichment
MF GO:0017076 purine nucleotide binding IEP Enrichment
MF GO:0017111 nucleoside-triphosphatase activity IEP Enrichment
BP GO:0019538 protein metabolic process IEP Enrichment
MF GO:0022803 passive transmembrane transporter activity IEP Enrichment
MF GO:0022857 transmembrane transporter activity IEP Enrichment
CC GO:0030286 dynein complex IEP Enrichment
MF GO:0030554 adenyl nucleotide binding IEP Enrichment
MF GO:0032553 ribonucleotide binding IEP Enrichment
MF GO:0032555 purine ribonucleotide binding IEP Enrichment
MF GO:0032559 adenyl ribonucleotide binding IEP Enrichment
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Enrichment
MF GO:0036094 small molecule binding IEP Enrichment
BP GO:0036211 protein modification process IEP Enrichment
MF GO:0043167 ion binding IEP Enrichment
MF GO:0043168 anion binding IEP Enrichment
BP GO:0043412 macromolecule modification IEP Enrichment
BP GO:0044267 cellular protein metabolic process IEP Enrichment
BP GO:0055085 transmembrane transport IEP Enrichment
MF GO:0097367 carbohydrate derivative binding IEP Enrichment
MF GO:0140096 catalytic activity, acting on a protein IEP Enrichment
MF GO:1901265 nucleoside phosphate binding IEP Enrichment
InterPro domains Description Start Stop
IPR024977 Apc4_WD40_dom 887 952
IPR005108 HELP 408 477
IPR001680 WD40_repeat 709 742
IPR001680 WD40_repeat 1046 1078
No external refs found!