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  5. Cz05g10270.t1

Cz05g10270.t1


Description : tRNA synthetase, B5-domain; Phenylalanine--tRNA ligase beta subunit, B1 domain; B3/B4 tRNA-binding domain; Phenylalanyl tRNA synthetase beta chain, core domain [Interproscan].


Gene families : OG_01_0003521 (OrthoFinder) Phylogenetic Tree(s): OG0003521_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cz05g10270.t1
Cluster HCCA: Cluster_26

Target Alias Description ECC score Gene Family Method Actions
Cre13.g603900 30783937 Protein biosynthesis.aminoacyl-tRNA synthetase... 0.06 OrthoFinder
Sro299_g111380.1 Contig1218.g11440 Phenylalanine--tRNA ligase beta subunit 0.03 OrthoFinder
XM_003064483.1 MicpuC2_45062, 45062 Phenylalanyl tRNA synthetase beta chain, core domain;... 0.03 OrthoFinder
lcl|LHPG02000014.1_cds_PRW39230.1_2539 PRW39230 Putative phenylalanine-tRNA ligase beta subunit 0.04 OrthoFinder
lcl|VRMN01000006.1_cds_KAA8493836.1_4598 KAA8493836 Phenylalanine--tRNA ligase beta subunit, cytoplasmic 0.03 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0000287 magnesium ion binding IEA Interproscan
MF GO:0003723 RNA binding IEA Interproscan
MF GO:0004826 phenylalanine-tRNA ligase activity IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
BP GO:0006432 phenylalanyl-tRNA aminoacylation IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003743 translation initiation factor activity IEP Enrichment
MF GO:0003849 3-deoxy-7-phosphoheptulonate synthase activity IEP Enrichment
MF GO:0004185 serine-type carboxypeptidase activity IEP Enrichment
MF GO:0005515 protein binding IEP Enrichment
CC GO:0005730 nucleolus IEP Enrichment
CC GO:0005737 cytoplasm IEP Enrichment
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP Enrichment
BP GO:0006364 rRNA processing IEP Enrichment
BP GO:0006396 RNA processing IEP Enrichment
MF GO:0008135 translation factor activity, RNA binding IEP Enrichment
MF GO:0008168 methyltransferase activity IEP Enrichment
MF GO:0008173 RNA methyltransferase activity IEP Enrichment
MF GO:0008175 tRNA methyltransferase activity IEP Enrichment
MF GO:0008176 tRNA (guanine-N7-)-methyltransferase activity IEP Enrichment
MF GO:0008408 3'-5' exonuclease activity IEP Enrichment
BP GO:0009072 aromatic amino acid family metabolic process IEP Enrichment
BP GO:0009073 aromatic amino acid family biosynthetic process IEP Enrichment
BP GO:0009451 RNA modification IEP Enrichment
BP GO:0016053 organic acid biosynthetic process IEP Enrichment
BP GO:0016072 rRNA metabolic process IEP Enrichment
MF GO:0016423 tRNA (guanine) methyltransferase activity IEP Enrichment
MF GO:0016597 amino acid binding IEP Enrichment
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Enrichment
MF GO:0016743 carboxyl- or carbamoyltransferase activity IEP Enrichment
MF GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups IEP Enrichment
MF GO:0016782 transferase activity, transferring sulphur-containing groups IEP Enrichment
CC GO:0030684 preribosome IEP Enrichment
CC GO:0030688 preribosome, small subunit precursor IEP Enrichment
CC GO:0032991 protein-containing complex IEP Enrichment
BP GO:0034470 ncRNA processing IEP Enrichment
MF GO:0035596 methylthiotransferase activity IEP Enrichment
MF GO:0043177 organic acid binding IEP Enrichment
MF GO:0045182 translation regulator activity IEP Enrichment
MF GO:0050497 alkylthioltransferase activity IEP Enrichment
MF GO:0051539 4 iron, 4 sulfur cluster binding IEP Enrichment
MF GO:0090079 translation regulator activity, nucleic acid binding IEP Enrichment
InterPro domains Description Start Stop
IPR040659 PhetRS_B1 36 78
IPR041616 PheRS_beta_core 367 584
IPR005146 B3/B4_tRNA-bd 107 268
IPR005147 tRNA_synthase_B5-dom 298 364
No external refs found!