1. Home
  2. Species
  3. Chromochloris zofingiensis
  4. Sequence
  5. Cz05g09170.t1

Cz05g09170.t1


Description : Translation elongation factor EFTu-like, domain 2; Elongation factor EFG, domain V-like; Transcription factor, GTP-binding domain; Elongation Factor G, domain II [Interproscan].


Gene families : OG_01_0000224 (OrthoFinder) Phylogenetic Tree(s): OG0000224_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cz05g09170.t1
Cluster HCCA: Cluster_92

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00020904.69 tig00020904_g15202.t1 RNA processing.RNA splicing.U2-type-intron-specific... 0.01 OrthoFinder
Cpa|evm.model.tig00021464.39 tig00021464_g21745.t1 Protein biosynthesis.translation elongation.eEF2... 0.03 OrthoFinder
Cre17.g737250 30781623, EFG5 RNA processing.RNA splicing.U2-type-intron-specific... 0.02 OrthoFinder
Dusal.0938s00002.1 33192805 Transcription factor, GTP-binding domain [Interproscan]. 0.02 OrthoFinder
EOD10726 No alias Elongation factor EFG, domain V-like; 116kDa U5 small... 0.03 OrthoFinder
EOD21720 No alias Elongation factor EFG, domain V-like; Transcription... 0.01 OrthoFinder
PTI_06G04210.1 No alias Elongation factor EFG, domain V-like; Transcription... 0.03 OrthoFinder
Sro1027_g233090.1 Contig109.g1260 109 kDa U5 small nuclear ribonucleoprotein component GFL 0.01 OrthoFinder
SymbC1.scaffold738.2 738.2 Transcription factor, GTP-binding domain; Elongation... 0.01 OrthoFinder
Transcript_contig_57318 57318 Elongation factor EFG, domain V-like [Interproscan]. 0.02 OrthoFinder
XM_002499484.1 MICPUN_97033, 97033 Elongation factor tu gtp-binding domain protein 2 (EF-TU) 0.04 OrthoFinder
XM_002504572.1 MICPUN_97868, 97868 Elongation Factor G, domain II; Translation elongation... 0.03 OrthoFinder
XM_003059631.1 MicpuC2_27460, 27460 Elongation factor EFG, domain V-like; Transcription... 0.02 OrthoFinder
XM_003063556.1 MicpuC2_29848, 29848 Transcription factor, GTP-binding domain; Elongation... 0.02 OrthoFinder
lcl|BLLF01006069.1_cds_GFH31923.1_26400 HaLaN_31054, GFH31923 Elongation factor 0.02 OrthoFinder
lcl|LHPG02000018.1_cds_PRW32859.1_3864 PRW32859 Ribosomal S5 Elongation factor G III V family 0.04 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003924 GTPase activity IEA Interproscan
MF GO:0005525 GTP binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0000049 tRNA binding IEP Enrichment
BP GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEP Enrichment
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP Enrichment
BP GO:0002097 tRNA wobble base modification IEP Enrichment
BP GO:0002098 tRNA wobble uridine modification IEP Enrichment
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003677 DNA binding IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Enrichment
MF GO:0004386 helicase activity IEP Enrichment
MF GO:0005524 ATP binding IEP Enrichment
CC GO:0005634 nucleus IEP Enrichment
CC GO:0005732 sno(s)RNA-containing ribonucleoprotein complex IEP Enrichment
BP GO:0006139 nucleobase-containing compound metabolic process IEP Enrichment
BP GO:0006351 transcription, DNA-templated IEP Enrichment
BP GO:0006364 rRNA processing IEP Enrichment
BP GO:0006396 RNA processing IEP Enrichment
BP GO:0006401 RNA catabolic process IEP Enrichment
BP GO:0006402 mRNA catabolic process IEP Enrichment
BP GO:0006725 cellular aromatic compound metabolic process IEP Enrichment
BP GO:0006807 nitrogen compound metabolic process IEP Enrichment
MF GO:0008094 ATPase, acting on DNA IEP Enrichment
BP GO:0008152 metabolic process IEP Enrichment
BP GO:0009451 RNA modification IEP Enrichment
BP GO:0009892 negative regulation of metabolic process IEP Enrichment
BP GO:0009987 cellular process IEP Enrichment
BP GO:0010605 negative regulation of macromolecule metabolic process IEP Enrichment
BP GO:0010629 negative regulation of gene expression IEP Enrichment
BP GO:0016070 RNA metabolic process IEP Enrichment
BP GO:0016071 mRNA metabolic process IEP Enrichment
BP GO:0016072 rRNA metabolic process IEP Enrichment
MF GO:0016740 transferase activity IEP Enrichment
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP Enrichment
MF GO:0016779 nucleotidyltransferase activity IEP Enrichment
MF GO:0016887 ATPase IEP Enrichment
BP GO:0018130 heterocycle biosynthetic process IEP Enrichment
BP GO:0019438 aromatic compound biosynthetic process IEP Enrichment
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Enrichment
MF GO:0030554 adenyl nucleotide binding IEP Enrichment
MF GO:0032559 adenyl ribonucleotide binding IEP Enrichment
BP GO:0032774 RNA biosynthetic process IEP Enrichment
MF GO:0034062 5'-3' RNA polymerase activity IEP Enrichment
BP GO:0034227 tRNA thio-modification IEP Enrichment
CC GO:0034457 Mpp10 complex IEP Enrichment
BP GO:0034470 ncRNA processing IEP Enrichment
BP GO:0034641 cellular nitrogen compound metabolic process IEP Enrichment
BP GO:0034645 cellular macromolecule biosynthetic process IEP Enrichment
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP Enrichment
BP GO:0034655 nucleobase-containing compound catabolic process IEP Enrichment
BP GO:0034660 ncRNA metabolic process IEP Enrichment
BP GO:0042254 ribosome biogenesis IEP Enrichment
BP GO:0043170 macromolecule metabolic process IEP Enrichment
CC GO:0043226 organelle IEP Enrichment
CC GO:0043227 membrane-bounded organelle IEP Enrichment
CC GO:0043229 intracellular organelle IEP Enrichment
CC GO:0043231 intracellular membrane-bounded organelle IEP Enrichment
BP GO:0044085 cellular component biogenesis IEP Enrichment
BP GO:0044237 cellular metabolic process IEP Enrichment
BP GO:0044238 primary metabolic process IEP Enrichment
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Enrichment
MF GO:0044877 protein-containing complex binding IEP Enrichment
BP GO:0046483 heterocycle metabolic process IEP Enrichment
BP GO:0071704 organic substance metabolic process IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
BP GO:0097659 nucleic acid-templated transcription IEP Enrichment
MF GO:0097747 RNA polymerase activity IEP Enrichment
MF GO:0140097 catalytic activity, acting on DNA IEP Enrichment
MF GO:0140098 catalytic activity, acting on RNA IEP Enrichment
CC GO:0140513 nuclear protein-containing complex IEP Enrichment
BP GO:1901360 organic cyclic compound metabolic process IEP Enrichment
BP GO:1901362 organic cyclic compound biosynthetic process IEP Enrichment
CC GO:1990904 ribonucleoprotein complex IEP Enrichment
InterPro domains Description Start Stop
IPR041095 EFG_II 580 644
IPR000640 EFG_V-like 1098 1180
IPR000795 T_Tr_GTP-bd_dom 17 273
IPR004161 EFTu-like_2 488 564
No external refs found!