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  5. Cz05g03070.t1

Cz05g03070.t1


Description : tRNA methyltransferase, Trm1 [Interproscan].


Gene families : OG_01_0002502 (OrthoFinder) Phylogenetic Tree(s): OG0002502_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cz05g03070.t1
Cluster HCCA: Cluster_143

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00021168.21 tig00021168_g19088.t1 RNA processing.RNA modification.rRNA/tRNA... 0.07 OrthoFinder
Cre10.g422000 30790663 RNA processing.RNA modification.rRNA/tRNA... 0.02 OrthoFinder
EOD10381 No alias Putative N2,N2-dimethylguanosine tRNA methyltransferase... 0.02 OrthoFinder
EOD31079 No alias Putative N2,N2-dimethylguanosine tRNA methyltransferase... 0.03 OrthoFinder
Sro2_g001870.2 No alias tRNA methyltransferase, Trm1 [Interproscan]. 0.01 OrthoFinder
Transcript_contig_58377 58377 tRNA methyltransferase, Trm1 [Interproscan]. 0.01 OrthoFinder
Vocar.0019s0179.1 32892771 tRNA methyltransferase, Trm1 [Interproscan]. 0.04 OrthoFinder
XM_002506107.1 MICPUN_98316, 98316 tRNA methyltransferase, Trm1 [Interproscan]. 0.05 OrthoFinder
XM_003056694.1 MicpuC2_56104, 56104 tRNA methyltransferase, Trm1 [Interproscan]. 0.04 OrthoFinder
lcl|BLLF01001104.1_cds_GFH17151.1_11628 HaLaN_13716, GFH17151 TRNA (guanine(26)-N(2))-dimethyltransferase 0.02 OrthoFinder
lcl|LHPG02000005.1_cds_PRW58454.1_7789 PRW58454 TRNA (guanine(26)-N(2))-dimethyltransferase 2 0.05 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
MF GO:0004809 tRNA (guanine-N2-)-methyltransferase activity IEA Interproscan
BP GO:0008033 tRNA processing IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000041 transition metal ion transport IEP Enrichment
MF GO:0000049 tRNA binding IEP Enrichment
MF GO:0000166 nucleotide binding IEP Enrichment
BP GO:0002097 tRNA wobble base modification IEP Enrichment
BP GO:0002098 tRNA wobble uridine modification IEP Enrichment
MF GO:0005381 iron ion transmembrane transporter activity IEP Enrichment
MF GO:0005524 ATP binding IEP Enrichment
CC GO:0005730 nucleolus IEP Enrichment
BP GO:0006364 rRNA processing IEP Enrichment
BP GO:0006400 tRNA modification IEP Enrichment
BP GO:0006826 iron ion transport IEP Enrichment
BP GO:0009451 RNA modification IEP Enrichment
BP GO:0016072 rRNA metabolic process IEP Enrichment
MF GO:0017076 purine nucleotide binding IEP Enrichment
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Enrichment
MF GO:0030554 adenyl nucleotide binding IEP Enrichment
MF GO:0032553 ribonucleotide binding IEP Enrichment
MF GO:0032555 purine ribonucleotide binding IEP Enrichment
MF GO:0032559 adenyl ribonucleotide binding IEP Enrichment
CC GO:0033588 elongator holoenzyme complex IEP Enrichment
BP GO:0034227 tRNA thio-modification IEP Enrichment
BP GO:0034755 iron ion transmembrane transport IEP Enrichment
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Enrichment
MF GO:0036094 small molecule binding IEP Enrichment
BP GO:0042254 ribosome biogenesis IEP Enrichment
MF GO:0043167 ion binding IEP Enrichment
MF GO:0043168 anion binding IEP Enrichment
BP GO:0044085 cellular component biogenesis IEP Enrichment
MF GO:0046915 transition metal ion transmembrane transporter activity IEP Enrichment
MF GO:0097367 carbohydrate derivative binding IEP Enrichment
MF GO:1901265 nucleoside phosphate binding IEP Enrichment
InterPro domains Description Start Stop
IPR002905 Trm1 16 436
No external refs found!