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  5. Cz04g33080.t1

Cz04g33080.t1


Description : Strawberry notch, helicase C domain; Strawberry notch, AAA domain [Interproscan].


Gene families : OG_01_0000467 (OrthoFinder) Phylogenetic Tree(s): OG0000467_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cz04g33080.t1
Cluster HCCA: Cluster_34

Target Alias Description ECC score Gene Family Method Actions
Cre01.g053250 30789240 Protein FORGETTER 1 OS=Arabidopsis thaliana 0.03 OrthoFinder
Cre07.g350100 30774786 Protein FORGETTER 1 OS=Arabidopsis thaliana 0.04 OrthoFinder
EOD10242 No alias Strawberry notch, AAA domain; Strawberry notch, helicase... 0.02 OrthoFinder
EOD41135 No alias Strawberry notch, AAA domain; Strawberry notch, helicase... 0.02 OrthoFinder
OT_03G05510.1 No alias Strawberry notch, helicase C domain; Strawberry notch,... 0.02 OrthoFinder
lcl|BLLF01002831.1_cds_GFH25494.1_19971 HaLaN_23470, GFH25494 Strawberry notch, AAA domain [Interproscan]. 0.02 OrthoFinder
lcl|BLLF01004849.1_cds_GFH30354.1_24831 HaLaN_29190, GFH30354 Strawberry notch, AAA domain [Interproscan]. 0.03 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEP Enrichment
MF GO:0003774 motor activity IEP Enrichment
MF GO:0003777 microtubule motor activity IEP Enrichment
MF GO:0003916 DNA topoisomerase activity IEP Enrichment
MF GO:0003918 DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity IEP Enrichment
MF GO:0005515 protein binding IEP Enrichment
MF GO:0005524 ATP binding IEP Enrichment
BP GO:0006265 DNA topological change IEP Enrichment
BP GO:0006928 movement of cell or subcellular component IEP Enrichment
BP GO:0007017 microtubule-based process IEP Enrichment
BP GO:0007018 microtubule-based movement IEP Enrichment
MF GO:0008017 microtubule binding IEP Enrichment
BP GO:0008064 regulation of actin polymerization or depolymerization IEP Enrichment
MF GO:0008092 cytoskeletal protein binding IEP Enrichment
MF GO:0015276 ligand-gated ion channel activity IEP Enrichment
MF GO:0015631 tubulin binding IEP Enrichment
BP GO:0016043 cellular component organization IEP Enrichment
MF GO:0016462 pyrophosphatase activity IEP Enrichment
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Enrichment
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Enrichment
MF GO:0017111 nucleoside-triphosphatase activity IEP Enrichment
MF GO:0022834 ligand-gated channel activity IEP Enrichment
MF GO:0030554 adenyl nucleotide binding IEP Enrichment
BP GO:0030832 regulation of actin filament length IEP Enrichment
BP GO:0030833 regulation of actin filament polymerization IEP Enrichment
BP GO:0032271 regulation of protein polymerization IEP Enrichment
BP GO:0032535 regulation of cellular component size IEP Enrichment
MF GO:0032559 adenyl ribonucleotide binding IEP Enrichment
BP GO:0032956 regulation of actin cytoskeleton organization IEP Enrichment
BP GO:0032970 regulation of actin filament-based process IEP Enrichment
BP GO:0033043 regulation of organelle organization IEP Enrichment
BP GO:0043254 regulation of protein-containing complex assembly IEP Enrichment
BP GO:0044087 regulation of cellular component biogenesis IEP Enrichment
BP GO:0051128 regulation of cellular component organization IEP Enrichment
BP GO:0051493 regulation of cytoskeleton organization IEP Enrichment
BP GO:0065008 regulation of biological quality IEP Enrichment
BP GO:0071103 DNA conformation change IEP Enrichment
BP GO:0071840 cellular component organization or biogenesis IEP Enrichment
BP GO:0090066 regulation of anatomical structure size IEP Enrichment
BP GO:0110053 regulation of actin filament organization IEP Enrichment
BP GO:1902903 regulation of supramolecular fiber organization IEP Enrichment
InterPro domains Description Start Stop
IPR039187 SNO_AAA 101 470
IPR026937 SBNO_Helicase_C_dom 598 892
No external refs found!