Cz04g31310.t1

Description : Integrase, catalytic core [Interproscan].

Gene families : OG_01_0000060 (OrthoFinder) Phylogenetic Tree(s): OG0000060_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Cz04g31310.t1

Target	Alias	Description	ECC score	Gene Family Method
Cz02g03020.t1	No alias	Reverse transcriptase/retrotransposon-derived protein,...	0.05	OrthoFinder
Cz02g27010.t1	No alias	Reverse transcriptase/retrotransposon-derived protein,...	0.05	OrthoFinder
Cz03g40130.t1	No alias	Reverse transcriptase/retrotransposon-derived protein,...	0.04	OrthoFinder
Cz04g07280.t1	No alias	Retroviral aspartyl protease [Interproscan].	0.07	OrthoFinder
Cz05g14160.t1	No alias	Retroviral aspartyl protease; Retrotransposon gag...	0.04	OrthoFinder
Cz06g11150.t1	No alias	Reverse transcriptase, RNase H-like domain; Integrase...	0.03	OrthoFinder
Cz06g32080.t1	No alias	Reverse transcriptase/retrotransposon-derived protein,...	0.05	OrthoFinder
Cz09g23090.t1	No alias	Integrase zinc-binding domain; Integrase, catalytic...	0.05	OrthoFinder
Cz11g01040.t1	No alias	Reverse transcriptase/retrotransposon-derived protein,...	0.04	OrthoFinder
Cz15g18080.t1	No alias	Chromo domain [Interproscan].	0.04	OrthoFinder
Cz19g08090.t1	No alias	Integrase, catalytic core; Reverse transcriptase domain;...	0.03	OrthoFinder

Type	GO Term	Name	Evidence	Source
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0015074	DNA integration	IEA	Interproscan
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0003916	DNA topoisomerase activity	IEP	Enrichment
MF	GO:0003918	DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity	IEP	Enrichment
BP	GO:0006265	DNA topological change	IEP	Enrichment
BP	GO:0006996	organelle organization	IEP	Enrichment
MF	GO:0008094	ATPase, acting on DNA	IEP	Enrichment
BP	GO:0051276	chromosome organization	IEP	Enrichment
BP	GO:0071103	DNA conformation change	IEP	Enrichment

InterPro domains	Description	Start	Stop
IPR001584	Integrase_cat-core	9	81

External Links

No external refs found!