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  5. Cz04g31220.t1

Cz04g31220.t1


Description : Vacuolar protein sorting-associated protein 54, C-terminal; Vacuolar protein sorting-associated protein 54, N-terminal [Interproscan].


Gene families : OG_01_0002044 (OrthoFinder) Phylogenetic Tree(s): OG0002044_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cz04g31220.t1
Cluster HCCA: Cluster_68

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000241.25 tig00000241_g20882.t1 No description available 0.02 OrthoFinder
Cre02.g087551 30786045 Vesicle trafficking.target membrane tethering.GARP/EARP... 0.05 OrthoFinder
PTI_30G00280.1 No alias Vacuolar protein sorting-associated protein 54,... 0.03 OrthoFinder
Vocar.0004s0424.1 32889786 Vacuolar protein sorting-associated protein 54,... 0.02 OrthoFinder
lcl|BLLF01000626.1_cds_GFH13552.1_8029 HaLaN_09457, GFH13552 Hypothetical protein 0.02 OrthoFinder
lcl|VRMN01000002.1_cds_KAA8496477.1_206 KAA8496477 Vacuolar protein sorting-associated protein 54, chloroplastic 0.02 OrthoFinder

Type GO Term Name Evidence Source
BP GO:0042147 retrograde transport, endosome to Golgi IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEP Enrichment
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP Enrichment
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP Enrichment
MF GO:0004559 alpha-mannosidase activity IEP Enrichment
MF GO:0004571 mannosyl-oligosaccharide 1,2-alpha-mannosidase activity IEP Enrichment
MF GO:0004674 protein serine/threonine kinase activity IEP Enrichment
MF GO:0005484 SNAP receptor activity IEP Enrichment
MF GO:0005488 binding IEP Enrichment
MF GO:0005509 calcium ion binding IEP Enrichment
MF GO:0005515 protein binding IEP Enrichment
CC GO:0005783 endoplasmic reticulum IEP Enrichment
CC GO:0005801 cis-Golgi network IEP Enrichment
CC GO:0005887 integral component of plasma membrane IEP Enrichment
BP GO:0006357 regulation of transcription by RNA polymerase II IEP Enrichment
BP GO:0006401 RNA catabolic process IEP Enrichment
BP GO:0006402 mRNA catabolic process IEP Enrichment
BP GO:0006886 intracellular protein transport IEP Enrichment
BP GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport IEP Enrichment
BP GO:0006890 retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum IEP Enrichment
BP GO:0008104 protein localization IEP Enrichment
BP GO:0009306 protein secretion IEP Enrichment
BP GO:0009892 negative regulation of metabolic process IEP Enrichment
BP GO:0009966 regulation of signal transduction IEP Enrichment
BP GO:0010468 regulation of gene expression IEP Enrichment
BP GO:0010605 negative regulation of macromolecule metabolic process IEP Enrichment
BP GO:0010629 negative regulation of gene expression IEP Enrichment
BP GO:0010646 regulation of cell communication IEP Enrichment
BP GO:0015031 protein transport IEP Enrichment
MF GO:0015923 mannosidase activity IEP Enrichment
MF GO:0015924 mannosyl-oligosaccharide mannosidase activity IEP Enrichment
CC GO:0016592 mediator complex IEP Enrichment
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP Enrichment
MF GO:0017150 tRNA dihydrouridine synthase activity IEP Enrichment
BP GO:0019222 regulation of metabolic process IEP Enrichment
BP GO:0023051 regulation of signaling IEP Enrichment
CC GO:0030117 membrane coat IEP Enrichment
CC GO:0030120 vesicle coat IEP Enrichment
CC GO:0030127 COPII vesicle coat IEP Enrichment
MF GO:0030674 protein-macromolecule adaptor activity IEP Enrichment
CC GO:0031226 intrinsic component of plasma membrane IEP Enrichment
BP GO:0032012 regulation of ARF protein signal transduction IEP Enrichment
BP GO:0032940 secretion by cell IEP Enrichment
BP GO:0033036 macromolecule localization IEP Enrichment
BP GO:0035592 establishment of protein localization to extracellular region IEP Enrichment
MF GO:0043169 cation binding IEP Enrichment
BP GO:0045184 establishment of protein localization IEP Enrichment
BP GO:0046578 regulation of Ras protein signal transduction IEP Enrichment
MF GO:0046872 metal ion binding IEP Enrichment
BP GO:0046903 secretion IEP Enrichment
BP GO:0048193 Golgi vesicle transport IEP Enrichment
BP GO:0048583 regulation of response to stimulus IEP Enrichment
BP GO:0050789 regulation of biological process IEP Enrichment
BP GO:0051056 regulation of small GTPase mediated signal transduction IEP Enrichment
MF GO:0051087 chaperone binding IEP Enrichment
MF GO:0060090 molecular adaptor activity IEP Enrichment
BP GO:0060255 regulation of macromolecule metabolic process IEP Enrichment
BP GO:0065007 biological regulation IEP Enrichment
BP GO:0071692 protein localization to extracellular region IEP Enrichment
BP GO:0071702 organic substance transport IEP Enrichment
BP GO:0071705 nitrogen compound transport IEP Enrichment
BP GO:0140352 export from cell IEP Enrichment
BP GO:1902531 regulation of intracellular signal transduction IEP Enrichment
InterPro domains Description Start Stop
IPR019515 VPS54_N 127 314
IPR012501 Vps54_C 660 792
No external refs found!