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  5. Cz04g13160.t1

Cz04g13160.t1


Description : Hypothetical protein


Gene families : OG_01_0005844 (OrthoFinder) Phylogenetic Tree(s): OG0005844_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cz04g13160.t1
Cluster HCCA: Cluster_4

Target Alias Description ECC score Gene Family Method Actions
Vocar.0019s0224.1 32892882 Hypothetical protein 0.03 OrthoFinder
lcl|LHPG02000002.1_cds_PRW60439.1_4650 PRW60439 30S ribosomal S1 isoform A 0.04 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000049 tRNA binding IEP Enrichment
BP GO:0000375 RNA splicing, via transesterification reactions IEP Enrichment
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Enrichment
BP GO:0000398 mRNA splicing, via spliceosome IEP Enrichment
CC GO:0000813 ESCRT I complex IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0003746 translation elongation factor activity IEP Enrichment
MF GO:0003954 NADH dehydrogenase activity IEP Enrichment
MF GO:0003955 NAD(P)H dehydrogenase (quinone) activity IEP Enrichment
MF GO:0004408 holocytochrome-c synthase activity IEP Enrichment
MF GO:0004417 hydroxyethylthiazole kinase activity IEP Enrichment
MF GO:0004784 superoxide dismutase activity IEP Enrichment
MF GO:0004843 thiol-dependent deubiquitinase IEP Enrichment
CC GO:0005739 mitochondrion IEP Enrichment
CC GO:0005759 mitochondrial matrix IEP Enrichment
CC GO:0005787 signal peptidase complex IEP Enrichment
BP GO:0006351 transcription, DNA-templated IEP Enrichment
BP GO:0006414 translational elongation IEP Enrichment
BP GO:0006465 signal peptide processing IEP Enrichment
BP GO:0006508 proteolysis IEP Enrichment
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP Enrichment
BP GO:0006772 thiamine metabolic process IEP Enrichment
BP GO:0006790 sulfur compound metabolic process IEP Enrichment
BP GO:0006801 superoxide metabolic process IEP Enrichment
MF GO:0008097 5S rRNA binding IEP Enrichment
MF GO:0008137 NADH dehydrogenase (ubiquinone) activity IEP Enrichment
MF GO:0008192 RNA guanylyltransferase activity IEP Enrichment
MF GO:0008193 tRNA guanylyltransferase activity IEP Enrichment
MF GO:0008199 ferric iron binding IEP Enrichment
MF GO:0008242 omega peptidase activity IEP Enrichment
MF GO:0009055 electron transfer activity IEP Enrichment
BP GO:0009057 macromolecule catabolic process IEP Enrichment
BP GO:0009059 macromolecule biosynthetic process IEP Enrichment
BP GO:0009228 thiamine biosynthetic process IEP Enrichment
BP GO:0016197 endosomal transport IEP Enrichment
BP GO:0016226 iron-sulfur cluster assembly IEP Enrichment
MF GO:0016655 oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor IEP Enrichment
MF GO:0016721 oxidoreductase activity, acting on superoxide radicals as acceptor IEP Enrichment
MF GO:0016846 carbon-sulfur lyase activity IEP Enrichment
MF GO:0019783 ubiquitin-like protein-specific protease activity IEP Enrichment
MF GO:0019843 rRNA binding IEP Enrichment
BP GO:0019941 modification-dependent protein catabolic process IEP Enrichment
BP GO:0022607 cellular component assembly IEP Enrichment
CC GO:0030532 small nuclear ribonucleoprotein complex IEP Enrichment
BP GO:0031163 metallo-sulfur cluster assembly IEP Enrichment
CC GO:0031974 membrane-enclosed lumen IEP Enrichment
CC GO:0032040 small-subunit processome IEP Enrichment
BP GO:0032509 endosome transport via multivesicular body sorting pathway IEP Enrichment
CC GO:0032991 protein-containing complex IEP Enrichment
BP GO:0034645 cellular macromolecule biosynthetic process IEP Enrichment
CC GO:0036452 ESCRT complex IEP Enrichment
BP GO:0042723 thiamine-containing compound metabolic process IEP Enrichment
BP GO:0042724 thiamine-containing compound biosynthetic process IEP Enrichment
BP GO:0043170 macromolecule metabolic process IEP Enrichment
CC GO:0043233 organelle lumen IEP Enrichment
BP GO:0043248 proteasome assembly IEP Enrichment
BP GO:0043632 modification-dependent macromolecule catabolic process IEP Enrichment
BP GO:0044237 cellular metabolic process IEP Enrichment
BP GO:0044248 cellular catabolic process IEP Enrichment
BP GO:0044260 cellular macromolecule metabolic process IEP Enrichment
BP GO:0044265 cellular macromolecule catabolic process IEP Enrichment
CC GO:0046540 U4/U6 x U5 tri-snRNP complex IEP Enrichment
MF GO:0050136 NADH dehydrogenase (quinone) activity IEP Enrichment
MF GO:0051536 iron-sulfur cluster binding IEP Enrichment
MF GO:0051540 metal cluster binding IEP Enrichment
BP GO:0051603 proteolysis involved in cellular protein catabolic process IEP Enrichment
CC GO:0070013 intracellular organelle lumen IEP Enrichment
MF GO:0070568 guanylyltransferase activity IEP Enrichment
BP GO:0071985 multivesicular body sorting pathway IEP Enrichment
BP GO:0072527 pyrimidine-containing compound metabolic process IEP Enrichment
BP GO:0072528 pyrimidine-containing compound biosynthetic process IEP Enrichment
BP GO:0072593 reactive oxygen species metabolic process IEP Enrichment
CC GO:0097525 spliceosomal snRNP complex IEP Enrichment
CC GO:0097526 spliceosomal tri-snRNP complex IEP Enrichment
BP GO:0097659 nucleic acid-templated transcription IEP Enrichment
MF GO:0101005 deubiquitinase activity IEP Enrichment
CC GO:0120114 Sm-like protein family complex IEP Enrichment
CC GO:1905368 peptidase complex IEP Enrichment
CC GO:1990904 ribonucleoprotein complex IEP Enrichment

No InterPro domains available for this sequence

No external refs found!