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  5. Cz03g28140.t1

Cz03g28140.t1


Description : Reverse transcriptase domain; Integrase zinc-binding domain; Reverse transcriptase, RNase H-like domain [Interproscan].


Gene families : OG_01_0000060 (OrthoFinder) Phylogenetic Tree(s): OG0000060_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cz03g28140.t1
Cluster HCCA: Cluster_21

Target Alias Description ECC score Gene Family Method Actions
Cz02g03020.t1 No alias Reverse transcriptase/retrotransposon-derived protein,... 0.09 OrthoFinder
Cz02g27010.t1 No alias Reverse transcriptase/retrotransposon-derived protein,... 0.04 OrthoFinder
Cz06g11160.t1 No alias Retroviral aspartyl protease [Interproscan]. 0.03 OrthoFinder
Cz09g23090.t1 No alias Integrase zinc-binding domain; Integrase, catalytic... 0.03 OrthoFinder
Cz19g08080.t1 No alias Retroviral aspartyl protease [Interproscan]. 0.05 OrthoFinder
Cz19g08090.t1 No alias Integrase, catalytic core; Reverse transcriptase domain;... 0.03 OrthoFinder
UNPLg00342.t1 No alias Hypothetical protein 0.06 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004252 serine-type endopeptidase activity IEP Enrichment
BP GO:0006508 proteolysis IEP Enrichment
MF GO:0008233 peptidase activity IEP Enrichment
MF GO:0008234 cysteine-type peptidase activity IEP Enrichment
MF GO:0008236 serine-type peptidase activity IEP Enrichment
MF GO:0008270 zinc ion binding IEP Enrichment
BP GO:0015074 DNA integration IEP Enrichment
MF GO:0017171 serine hydrolase activity IEP Enrichment
MF GO:0043169 cation binding IEP Enrichment
BP GO:0043170 macromolecule metabolic process IEP Enrichment
MF GO:0046872 metal ion binding IEP Enrichment
MF GO:0046914 transition metal ion binding IEP Enrichment
InterPro domains Description Start Stop
IPR041588 Integrase_H2C2 611 666
IPR000477 RT_dom 165 323
IPR041373 RT_RNaseH 413 516
No external refs found!