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  5. Cz03g21120.t1

Cz03g21120.t1


Description : RNA recognition motif domain [Interproscan].


Gene families : OG_01_0000163 (OrthoFinder) Phylogenetic Tree(s): OG0000163_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cz03g21120.t1
Cluster HCCA: Cluster_130

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000383.37 tig00000383_g24647.t1 Splicing factor U2af large subunit A OS=Nicotiana plumbaginifolia 0.01 OrthoFinder
Cpa|evm.model.tig00021464.4 tig00021464_g21711.t1 No description available 0.02 OrthoFinder
Cre07.g352650 30775322 No description available 0.03 OrthoFinder
Cre09.g391949 30781196 RNA processing.RNA splicing.U2-type-intron-specific... 0.03 OrthoFinder
Dusal.0031s00043.1 33192235 RNA recognition motif domain [Interproscan]. 0.02 OrthoFinder
Dusal.0173s00022.1 33191835 Hypothetical protein 0.03 OrthoFinder
Dusal.0647s00003.1 33194461 RNA recognition motif domain [Interproscan]. 0.02 OrthoFinder
Dusal.0862s00006.1 33191519 Hypothetical protein 0.03 OrthoFinder
EOD21349 No alias Hypothetical protein [Ensembl]. 0.01 OrthoFinder
EOD34357 No alias RNA recognition motif domain [Interproscan]. 0.03 OrthoFinder
EOD35081 No alias RNA recognition motif domain [Interproscan]. 0.02 OrthoFinder
OT_03G00400.1 No alias RNA recognition motif domain [Interproscan]. 0.02 OrthoFinder
Sro4_g003060.1 Contig3815.g29224 Splicing factor U2af large subunit 0.02 OrthoFinder
Sro760_g198350.1 Contig3371.g26396 U2AF 65 kDa subunit 0.01 OrthoFinder
Transcript_contig_55294 55294 RNA recognition motif domain [Interproscan]. 0.02 OrthoFinder
Transcript_contig_56236 56236 RNA recognition motif domain [Interproscan]. 0.01 OrthoFinder
Vocar.0012s0273.1 32895004 RNA recognition motif domain [Interproscan]. 0.03 OrthoFinder
Vocar.0044s0038.1 32896597 RNA recognition motif domain [Interproscan]. 0.03 OrthoFinder
XM_003056228.1 MicpuC2_70844, 70844 RNA binding protein 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000096 sulfur amino acid metabolic process IEP Enrichment
MF GO:0000166 nucleotide binding IEP Enrichment
MF GO:0000339 RNA cap binding IEP Enrichment
MF GO:0000340 RNA 7-methylguanosine cap binding IEP Enrichment
BP GO:0000413 protein peptidyl-prolyl isomerization IEP Enrichment
BP GO:0001522 pseudouridine synthesis IEP Enrichment
MF GO:0003682 chromatin binding IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0003729 mRNA binding IEP Enrichment
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP Enrichment
MF GO:0003924 GTPase activity IEP Enrichment
MF GO:0004386 helicase activity IEP Enrichment
MF GO:0004813 alanine-tRNA ligase activity IEP Enrichment
MF GO:0005524 ATP binding IEP Enrichment
MF GO:0005525 GTP binding IEP Enrichment
CC GO:0005634 nucleus IEP Enrichment
CC GO:0005685 U1 snRNP IEP Enrichment
BP GO:0006376 mRNA splice site selection IEP Enrichment
BP GO:0006419 alanyl-tRNA aminoacylation IEP Enrichment
BP GO:0006534 cysteine metabolic process IEP Enrichment
MF GO:0008094 ATPase, acting on DNA IEP Enrichment
BP GO:0009069 serine family amino acid metabolic process IEP Enrichment
BP GO:0009092 homoserine metabolic process IEP Enrichment
BP GO:0009451 RNA modification IEP Enrichment
MF GO:0009982 pseudouridine synthase activity IEP Enrichment
MF GO:0015035 protein-disulfide reductase activity IEP Enrichment
MF GO:0015036 disulfide oxidoreductase activity IEP Enrichment
BP GO:0016070 RNA metabolic process IEP Enrichment
MF GO:0016462 pyrophosphatase activity IEP Enrichment
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Enrichment
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Enrichment
MF GO:0016853 isomerase activity IEP Enrichment
MF GO:0016859 cis-trans isomerase activity IEP Enrichment
MF GO:0016866 intramolecular transferase activity IEP Enrichment
MF GO:0016887 ATPase IEP Enrichment
MF GO:0017076 purine nucleotide binding IEP Enrichment
MF GO:0017111 nucleoside-triphosphatase activity IEP Enrichment
BP GO:0018193 peptidyl-amino acid modification IEP Enrichment
BP GO:0018208 peptidyl-proline modification IEP Enrichment
MF GO:0019001 guanyl nucleotide binding IEP Enrichment
BP GO:0019346 transsulfuration IEP Enrichment
BP GO:0022618 ribonucleoprotein complex assembly IEP Enrichment
CC GO:0030532 small nuclear ribonucleoprotein complex IEP Enrichment
MF GO:0030554 adenyl nucleotide binding IEP Enrichment
MF GO:0032553 ribonucleotide binding IEP Enrichment
MF GO:0032555 purine ribonucleotide binding IEP Enrichment
MF GO:0032559 adenyl ribonucleotide binding IEP Enrichment
MF GO:0032561 guanyl ribonucleotide binding IEP Enrichment
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Enrichment
MF GO:0036094 small molecule binding IEP Enrichment
MF GO:0043167 ion binding IEP Enrichment
MF GO:0043168 anion binding IEP Enrichment
CC GO:0043227 membrane-bounded organelle IEP Enrichment
CC GO:0043231 intracellular membrane-bounded organelle IEP Enrichment
BP GO:0043412 macromolecule modification IEP Enrichment
BP GO:0050667 homocysteine metabolic process IEP Enrichment
BP GO:0071826 ribonucleoprotein complex subunit organization IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
MF GO:0097367 carbohydrate derivative binding IEP Enrichment
CC GO:0097525 spliceosomal snRNP complex IEP Enrichment
CC GO:0120114 Sm-like protein family complex IEP Enrichment
MF GO:0140097 catalytic activity, acting on DNA IEP Enrichment
MF GO:1901265 nucleoside phosphate binding IEP Enrichment
InterPro domains Description Start Stop
IPR000504 RRM_dom 354 388
IPR000504 RRM_dom 535 600
No external refs found!