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  5. Cz03g13170.t1

Cz03g13170.t1


Description : U3 small nucleolar RNA-associated protein 6 [Interproscan].


Gene families : OG_01_0002785 (OrthoFinder) Phylogenetic Tree(s): OG0002785_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cz03g13170.t1
Cluster HCCA: Cluster_26

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000571.29 tig00000571_g2183.t1 Protein biosynthesis.cytosolic ribosome.small subunit... 0.06 OrthoFinder
Cre10.g442000 30790656 Protein biosynthesis.cytosolic ribosome.small subunit... 0.11 OrthoFinder
Dusal.0174s00015.1 33196283 U3 small nucleolar RNA-associated protein 6 [Interproscan]. 0.05 OrthoFinder
EOD04628 No alias U3 small nucleolar RNA-associated protein 6 [Interproscan]. 0.09 OrthoFinder
EOD34666 No alias U3 small nucleolar RNA-associated protein 6 [Interproscan]. 0.01 OrthoFinder
PTI_08G02440.1 No alias U3 small nucleolar RNA-associated protein 6 [Interproscan]. 0.12 OrthoFinder
Sro757_g197930.1 Contig322.g4282 RNA-associated protein 6 homolog 0.11 OrthoFinder
TP16G00520.1 No alias U3 small nucleolar RNA-associated protein 6 [Interproscan]. 0.05 OrthoFinder
Transcript_contig_66361 66361 U3 small nucleolar RNA-associated protein 6 [Interproscan]. 0.03 OrthoFinder
Vocar.0001s1250.1 32884322 U3 small nucleolar RNA-associated protein 6 [Interproscan]. 0.04 OrthoFinder
lcl|BLLF01005177.1_cds_GFH30837.1_25314 HaLaN_29763, GFH30837 Hypothetical protein 0.02 OrthoFinder
lcl|LHPG02000007.1_cds_PRW57423.1_9057 PRW57423 U3 small nucleolar RNA-associated 6-like protein 0.11 OrthoFinder
lcl|VRMN01000001.1_cds_KAA8499489.1_8442 KAA8499489 U3 small nucleolar RNA-associated protein 6 0.06 OrthoFinder

Type GO Term Name Evidence Source
BP GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEA Interproscan
MF GO:0030515 snoRNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000049 tRNA binding IEP Enrichment
BP GO:0001522 pseudouridine synthesis IEP Enrichment
BP GO:0002097 tRNA wobble base modification IEP Enrichment
BP GO:0002098 tRNA wobble uridine modification IEP Enrichment
MF GO:0005515 protein binding IEP Enrichment
CC GO:0005634 nucleus IEP Enrichment
CC GO:0005730 nucleolus IEP Enrichment
BP GO:0006351 transcription, DNA-templated IEP Enrichment
BP GO:0006399 tRNA metabolic process IEP Enrichment
BP GO:0006400 tRNA modification IEP Enrichment
BP GO:0006450 regulation of translational fidelity IEP Enrichment
BP GO:0008033 tRNA processing IEP Enrichment
BP GO:0009451 RNA modification IEP Enrichment
MF GO:0016782 transferase activity, transferring sulphur-containing groups IEP Enrichment
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Enrichment
CC GO:0030684 preribosome IEP Enrichment
CC GO:0032040 small-subunit processome IEP Enrichment
BP GO:0032774 RNA biosynthetic process IEP Enrichment
CC GO:0033588 elongator holoenzyme complex IEP Enrichment
BP GO:0034227 tRNA thio-modification IEP Enrichment
MF GO:0035596 methylthiotransferase activity IEP Enrichment
BP GO:0042254 ribosome biogenesis IEP Enrichment
CC GO:0043226 organelle IEP Enrichment
CC GO:0043227 membrane-bounded organelle IEP Enrichment
CC GO:0043229 intracellular organelle IEP Enrichment
CC GO:0043231 intracellular membrane-bounded organelle IEP Enrichment
BP GO:0044085 cellular component biogenesis IEP Enrichment
MF GO:0050497 alkylthioltransferase activity IEP Enrichment
MF GO:0051539 4 iron, 4 sulfur cluster binding IEP Enrichment
BP GO:0071840 cellular component organization or biogenesis IEP Enrichment
BP GO:0097659 nucleic acid-templated transcription IEP Enrichment
InterPro domains Description Start Stop
IPR013949 Utp6 9 91
No external refs found!