Cz03g08200.t1

Description : RecF/RecN/SMC, N-terminal; SMCs flexible hinge [Interproscan].

Gene families : OG_01_0001598 (OrthoFinder) Phylogenetic Tree(s): OG0001598_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Cz03g08200.t1
Cluster	HCCA: Cluster_122

Target	Alias	Description	ECC score	Gene Family Method
Cpa\|evm.model.tig00020553.145	tig00020553_g10636.t1	Cell cycle.mitosis and meiosis.sister chromatid...	0.03	OrthoFinder
Cre15.g635800	30783526, SMC1	Structural maintenance of chromosomes protein 1...	0.04	OrthoFinder
Dusal.0197s00007.1	33188525	Hypothetical protein	0.01	OrthoFinder
Dusal.0197s00008.1	33188527	SMCs flexible hinge [Interproscan].	0.02	OrthoFinder
Dusal.0360s00013.1	33194965	Hypothetical protein	0.02	OrthoFinder
EOD19992	No alias	SMCs flexible hinge; RecF/RecN/SMC, N-terminal [Interproscan].	0.03	OrthoFinder
EOD19993	No alias	Hypothetical protein [Ensembl].	0.04	OrthoFinder
OT_03G03810.1	No alias	RecF/RecN/SMC, N-terminal; SMCs flexible hinge [Interproscan].	0.07	OrthoFinder
PTI_02G06300.1	No alias	RecF/RecN/SMC, N-terminal; SMCs flexible hinge [Interproscan].	0.03	OrthoFinder
Sro767_g199480.1	Contig2377.g19536	Of chromosomes protein 1A	0.02	OrthoFinder
TP07G02860.1	No alias	RecF/RecN/SMC, N-terminal; SMCs flexible hinge [Interproscan].	0.02	OrthoFinder
Transcript_contig_54202	54202	RecF/RecN/SMC, N-terminal; SMCs flexible hinge [Interproscan].	0.04	OrthoFinder
Transcript_contig_56203	56203	RecF/RecN/SMC, N-terminal [Interproscan].	0.02	OrthoFinder
XM_002499807.1	MICPUN_56550, 56550	Condensin complex component	0.04	OrthoFinder
lcl\|LHPG02000019.1_cds_PRW32480.1_3950	PRW32480	Structural maintenance of chromosomes 1	0.02	OrthoFinder
lcl\|VRMN01000001.1_cds_KAA8499351.1_8304	KAA8499351	Structural maintenance of chromosomes protein 1	0.03	OrthoFinder

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IEA	Interproscan
MF	GO:0005524	ATP binding	IEA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005694	chromosome	IEA	Interproscan
BP	GO:0006996	organelle organization	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0051276	chromosome organization	IEA	Interproscan
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000145	exocyst	IEP	Enrichment
BP	GO:0000723	telomere maintenance	IEP	Enrichment
MF	GO:0003677	DNA binding	IEP	Enrichment
MF	GO:0003916	DNA topoisomerase activity	IEP	Enrichment
MF	GO:0003918	DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity	IEP	Enrichment
MF	GO:0004177	aminopeptidase activity	IEP	Enrichment
MF	GO:0004668	protein-arginine deiminase activity	IEP	Enrichment
BP	GO:0006259	DNA metabolic process	IEP	Enrichment
BP	GO:0006265	DNA topological change	IEP	Enrichment
BP	GO:0006576	cellular biogenic amine metabolic process	IEP	Enrichment
BP	GO:0006595	polyamine metabolic process	IEP	Enrichment
BP	GO:0006596	polyamine biosynthetic process	IEP	Enrichment
BP	GO:0006887	exocytosis	IEP	Enrichment
BP	GO:0007062	sister chromatid cohesion	IEP	Enrichment
BP	GO:0007064	mitotic sister chromatid cohesion	IEP	Enrichment
MF	GO:0008408	3'-5' exonuclease activity	IEP	Enrichment
BP	GO:0009309	amine biosynthetic process	IEP	Enrichment
BP	GO:0009445	putrescine metabolic process	IEP	Enrichment
BP	GO:0009446	putrescine biosynthetic process	IEP	Enrichment
MF	GO:0016813	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amidines	IEP	Enrichment
MF	GO:0016853	isomerase activity	IEP	Enrichment
BP	GO:0032200	telomere organization	IEP	Enrichment
BP	GO:0032940	secretion by cell	IEP	Enrichment
BP	GO:0042401	cellular biogenic amine biosynthetic process	IEP	Enrichment
BP	GO:0044106	cellular amine metabolic process	IEP	Enrichment
BP	GO:0044260	cellular macromolecule metabolic process	IEP	Enrichment
BP	GO:0046903	secretion	IEP	Enrichment
BP	GO:0060249	anatomical structure homeostasis	IEP	Enrichment
BP	GO:0071103	DNA conformation change	IEP	Enrichment
CC	GO:0099023	vesicle tethering complex	IEP	Enrichment
MF	GO:0140097	catalytic activity, acting on DNA	IEP	Enrichment
BP	GO:0140352	export from cell	IEP	Enrichment
BP	GO:1903047	mitotic cell cycle process	IEP	Enrichment

InterPro domains	Description	Start	Stop
IPR003395	RecF/RecN/SMC_N	321	873
IPR010935	SMC_hinge	204	320

External Links

No external refs found!

Cz03g08200.t1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation