Heatmap: Cluster_74 (HCCA)

View as: (view raw or row-normalized)

View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

Gene
4h after treatment
4h after treatment,No nitrate
8h after treatment
8h after treatment,No nitrate
20C
20h after treatment
20h after treatment,No nitrate
20h after treatment,Nocodazole added
36h after treatment
36h after treatment,No phosphate
Blue light,10min after light change
Blue light,60min after light change
Bohlin
CCAP1055/1,20C
CCAP1055/1,20C,High CO2,OligoDT primed
CCAP1055/1,20C,Low CO2,OligoDT primed
CCAP1055/1,20C,Normal CO2,OligoDT primed
CCMP2561
CCMP2561 Nitrase Reductase Knockout
CCMP632
CCMP632,24h
CCMP632,48h
CCMP632,72h
CCMP632,High light acclimated WT
CCMP632,Low light acclimated WT
NEPCC640,8h,1000ppmv CO2
NEPCC640,8h,390 ppmv CO2
No light,8h after treatment
Pt-1
Pt-1 8.6
Pt-1 8.6,With nitrogen
Pt-1 8.6,Without nitrogen
Red light,0min before light change
UTEX 646,Blue light
UTEX 646,No light
1.63 0.63 0.77 -1.04 0.79 1.21 -2.49 0.73 0.98 0.47 -4.59 -4.68 - -7.62 -0.44 -0.21 0.46 -1.71 -1.53 -1.75 -5.66 -4.02 -5.68 -0.76 -0.14 - - 3.17 -0.03 -0.31 0.54 -1.58 -3.65 -1.76 -1.58
0.73 0.33 0.44 0.69 0.81 0.54 1.23 0.66 1.36 0.78 -6.39 - - - -2.32 -1.58 -1.53 -0.87 -0.39 -0.62 0.77 0.84 0.15 -1.05 -0.69 -1.77 -2.2 1.68 0.26 0.52 -0.18 0.93 - - -
- - - - 2.63 - - - - 0.78 0.97 - - - - - - -3.16 - - -1.68 -0.54 4.27 - - - - - - 1.7 - - 0.57 - -
0.78 1.49 1.15 1.67 1.24 1.34 1.08 1.94 1.06 -0.01 - - -3.02 - - -2.21 - -6.18 -2.06 -6.75 -1.79 -2.37 - -0.29 - -3.11 -4.14 3.17 -3.88 -5.32 - - -6.45 - -
- 2.74 0.91 1.2 0.43 2.03 2.22 1.18 2.05 - - - - - - - - - - - - - - - - - - 2.63 - - - - 0.49 - -
3.65 - - - - - - - - - - - - - - - - - - - - - - - - - - 4.49 - - - - - - -
0.7 0.67 -0.14 -0.81 -0.12 -0.76 -1.93 -1.36 0.04 -0.05 -1.8 -1.33 -1.05 -1.2 0.14 0.81 0.4 -0.78 -0.45 -2.14 -0.79 -0.23 -0.41 -1.07 -0.71 0.71 0.14 2.93 0.2 -0.13 0.24 -0.23 -1.44 -1.57 -1.27
-1.64 -1.34 -1.62 -1.13 0.87 -0.54 -0.84 -1.41 -0.04 -0.3 -0.38 -0.06 0.24 0.15 -1.98 -2.11 -2.73 -0.68 -1.36 0.46 1.66 0.75 2.13 0.0 1.83 -3.78 -4.69 -0.46 0.65 -0.33 -1.41 0.09 -0.41 -1.01 0.63
-0.31 -0.53 -1.11 -0.83 0.19 0.6 -0.19 -0.89 0.63 0.08 0.41 -0.89 -1.81 -0.3 -0.45 -0.68 -0.72 -0.47 -0.56 -1.23 -0.08 -0.94 1.04 -0.11 1.09 -0.99 -0.83 1.94 0.91 -0.39 -0.1 -0.31 -0.99 -0.08 0.8
-0.19 -0.45 -0.19 -0.43 -0.14 -0.08 -0.59 -0.76 0.1 -0.1 -1.11 -0.95 -1.36 -1.67 -0.12 -0.33 -3.0 0.29 0.4 -1.22 1.25 -0.09 1.14 0.84 1.62 -1.39 -0.93 -0.45 0.33 0.13 0.14 0.04 -0.8 -0.1 1.1
-1.24 -2.38 -2.37 -3.51 0.47 -0.69 -2.87 -2.06 -0.46 -1.38 1.71 0.59 -0.9 -1.16 -1.5 -2.29 -2.67 -1.75 -2.0 -1.38 1.24 0.32 2.99 -0.45 0.99 -1.41 -0.55 1.02 -0.2 -0.83 -0.11 -1.92 0.18 -1.01 0.69
0.25 -0.16 0.56 0.15 -1.11 -0.86 -0.79 -0.74 -0.56 -0.65 -1.81 -1.16 -0.15 -1.42 0.54 0.17 -1.37 0.17 0.15 -0.18 1.4 -0.23 -0.11 -0.02 -0.63 1.24 0.19 0.39 0.47 -0.26 -0.43 0.21 -0.69 0.71 0.57
-2.1 -1.86 -1.55 -1.0 0.5 -1.77 -0.95 -1.86 -0.14 -0.86 -1.76 -1.73 0.41 0.34 -2.55 -2.35 -3.21 -0.22 -0.84 0.21 0.8 -2.08 3.21 -1.9 0.66 0.59 0.51 -0.48 1.11 -1.65 -1.81 -1.23 -1.54 -0.63 1.35
-3.02 -2.54 -1.23 -0.9 0.13 -0.98 -0.72 -1.21 0.39 -0.59 -1.35 -1.58 -0.01 -1.0 -3.07 -2.54 -2.11 -0.29 -1.19 -0.28 2.27 -1.04 2.27 -0.61 2.06 -0.21 -0.18 0.57 0.26 -1.02 -1.99 -0.5 -1.37 -1.1 1.4
0.19 1.83 1.25 2.17 0.14 1.3 1.32 2.25 0.36 -2.2 -6.88 -1.29 - - -1.94 -0.41 - -2.43 -3.66 - -2.14 -0.78 - -0.52 - - -1.56 2.78 -2.31 -3.78 - - -1.25 - -
-3.83 -2.58 -2.53 -1.62 0.61 -1.22 -1.09 -1.65 -0.19 -0.36 -0.27 -0.42 1.13 0.63 -1.99 -1.41 -2.35 -0.77 -1.11 1.11 1.04 0.46 2.92 -0.42 0.88 -2.15 -1.94 -0.01 0.93 -0.92 -0.9 -0.13 -0.26 -3.5 -0.57
0.03 -0.39 -0.66 -0.61 0.7 -0.32 -0.46 -1.15 -0.12 -0.21 -0.24 -0.09 -1.25 0.01 -0.78 -0.93 -0.87 -0.21 -0.02 0.05 0.48 0.91 2.5 -0.27 -0.5 -0.34 -0.94 1.71 -0.72 -1.07 -1.06 -1.04 -0.2 -2.19 -0.75
-0.04 -0.33 -0.07 -0.52 -0.22 -0.35 -0.9 -1.38 0.01 -0.43 -1.99 -1.64 0.59 -1.31 0.8 -0.21 -2.06 0.72 0.29 -0.75 1.42 -1.51 1.03 0.01 0.48 0.87 0.03 0.11 0.49 -1.06 -1.26 -0.81 -1.25 0.36 1.34
2.13 - -0.71 -0.35 2.69 0.53 - - 1.51 1.64 - - - - - - - -3.34 - - -2.92 - - - - - - 3.52 - 0.17 - 1.33 - - -
-0.25 -0.37 -0.5 -0.22 0.28 -0.67 -0.65 -1.05 0.56 0.15 -0.55 -0.23 0.5 -0.6 0.1 0.46 0.05 -0.01 0.31 -0.65 0.86 -0.43 0.77 -0.16 -0.77 -0.15 -1.61 0.23 0.69 -0.79 0.09 -2.05 0.08 0.57 1.08
0.84 1.79 0.49 1.19 0.62 1.43 1.18 0.88 2.03 1.52 -5.52 -5.21 -3.48 - - - - -5.64 -7.17 -5.53 -3.45 - - - - - -3.81 3.36 - -4.41 - - -4.1 - -4.61
0.06 -0.13 -0.29 -0.06 0.47 0.19 0.31 -0.54 1.06 0.57 -0.45 -0.24 0.44 -1.05 -1.5 -1.53 -2.23 -0.74 -0.53 -0.46 -0.2 0.47 1.27 -0.69 -0.24 -0.89 -1.92 2.0 0.3 -0.4 -0.45 -0.26 -0.06 -0.48 -0.42
1.0 1.3 0.24 0.96 0.61 0.95 1.66 0.15 0.88 0.99 -3.61 -4.77 -0.53 - -4.51 -5.22 -5.48 -1.44 -3.56 0.07 -0.18 1.17 0.11 -1.56 -2.57 - -2.21 0.58 -0.67 0.92 -0.58 1.81 -4.56 -2.2 -3.68
0.06 0.17 -0.95 0.48 -0.03 0.37 1.41 -0.52 1.21 0.84 -3.37 -3.22 1.69 -1.15 - - -6.15 -2.02 -7.68 0.83 0.18 -0.37 0.28 0.26 -1.45 -1.06 -0.98 0.81 0.91 0.84 -0.87 1.56 -4.08 -1.17 -2.53
-0.18 0.11 -0.3 0.69 -1.1 -0.76 0.41 -1.66 -0.36 0.01 -2.09 -1.89 0.23 -2.58 -1.01 0.28 -1.13 0.16 0.34 1.49 0.55 -1.24 0.28 -0.05 1.31 -1.84 -3.46 0.26 1.7 0.01 -0.86 1.1 -1.7 -0.91 0.01
0.16 0.12 0.41 0.29 -0.51 -0.06 0.07 -0.88 0.95 0.47 -0.47 -0.2 0.48 -1.09 -0.23 0.34 -1.89 -0.56 -0.82 -0.48 0.08 -0.91 0.07 -0.15 -0.56 0.08 -0.56 1.46 0.62 -0.99 -0.93 -1.03 0.06 0.74 0.46
-0.03 -0.87 -0.54 -1.4 0.54 0.29 -1.71 -1.18 -0.13 -0.15 0.86 0.55 -0.56 -1.79 -0.32 -1.53 -0.46 -0.39 -1.06 -0.55 0.53 -0.42 2.3 0.24 2.06 -1.35 -1.7 -0.03 -0.68 -1.09 -0.76 -0.9 0.1 -0.11 -0.38
0.02 -0.21 -0.21 -0.36 -0.23 0.03 -0.64 -0.86 0.3 0.08 -0.76 -0.76 -0.93 -1.07 -0.35 -0.31 -2.38 0.18 0.07 -0.86 1.11 0.44 1.41 0.09 0.8 -0.09 0.87 -0.2 0.54 -0.33 -0.38 -0.36 -0.67 0.29 0.2
0.19 -0.25 -0.54 -0.77 0.26 0.64 -0.36 -1.21 1.09 0.55 -1.43 -1.58 -0.96 -3.01 1.03 1.03 0.61 -0.11 -0.04 -1.33 0.12 -1.01 0.17 -0.45 0.07 -0.29 -0.39 2.13 -0.04 -1.37 -0.44 -2.23 -1.1 -0.8 0.19
-0.83 -0.7 -1.02 -0.68 -0.49 -0.9 -0.01 -0.3 -0.23 -0.27 1.71 1.37 -1.26 -0.31 -1.7 -1.27 -2.99 -0.72 -0.72 -0.42 1.35 0.63 2.09 -0.83 -0.24 -0.86 -1.17 1.22 -0.21 -1.6 -1.94 -1.41 -0.02 0.52 -0.42
-0.67 -0.56 -0.73 -0.73 -1.3 -1.49 -2.54 -1.09 -1.09 -1.31 0.43 -0.14 0.42 -1.02 -0.19 0.87 -1.05 0.46 0.59 -1.28 -0.08 0.59 -0.87 -0.65 -1.42 -0.17 0.36 1.98 1.11 0.02 0.22 -0.68 -0.34 1.07 0.73
-1.22 -1.2 -1.26 -1.4 0.41 -0.83 -1.39 -1.12 -0.98 -1.26 -1.08 -1.05 -0.47 0.25 -1.46 -1.63 -3.14 -1.22 -0.81 -0.64 1.11 -0.46 2.71 0.24 2.31 -1.42 -1.18 -1.87 0.45 -0.46 -0.1 -1.31 -1.12 -1.36 1.78
2.54 - - - - 2.68 - - 2.86 - - - - - - - - - - - - - - - - - - 3.96 - - - - - - -
1.03 0.9 0.22 0.43 0.21 1.02 0.59 1.04 1.32 0.92 -5.09 -6.01 -6.1 -7.7 -4.06 -4.85 -5.2 -3.1 -1.56 -3.07 -1.72 -3.9 -1.72 -3.58 -2.93 -0.22 0.42 3.42 -2.9 0.47 -5.37 0.36 -5.83 -5.14 -5.09
- - - - 2.52 - - - - - - - - - - - - -1.69 - - -0.28 1.92 4.03 - - - 2.89 - -0.65 - - - - - -
-4.01 -3.34 -2.89 -2.99 0.84 -1.59 -2.98 -1.89 -1.21 -1.22 -2.0 -1.83 0.23 0.15 -3.84 -2.87 -2.78 -1.43 -1.59 0.19 1.48 -0.54 1.76 1.69 3.18 -2.36 -3.63 -2.32 1.41 -0.3 -0.38 -0.05 -2.13 -2.1 -0.25
0.47 - 0.79 2.37 - 0.56 - 0.77 1.94 - -0.12 0.01 -16.12 - - - - -2.31 - - - -0.58 - - - - - 4.03 - - - - -0.9 - -
-0.3 -0.51 -0.67 -0.71 -0.19 0.08 -0.46 -0.68 0.48 0.32 1.3 0.47 -0.56 -1.12 -0.2 -0.03 -0.93 -0.24 -0.32 -0.68 0.59 0.81 0.95 0.23 0.72 -0.77 -1.15 1.33 -0.22 -1.09 -0.47 -1.78 0.27 -0.12 -0.59
-1.3 -0.24 -1.87 -0.28 0.71 0.09 -0.01 -2.43 0.43 -0.32 -0.87 -1.03 -0.41 -3.4 -0.43 -0.32 -0.92 -0.21 0.2 -1.54 -2.87 -2.27 -1.21 -2.5 0.81 0.7 -0.37 3.24 0.48 -2.15 -1.58 -1.96 -0.54 -1.84 1.35
-0.48 -0.4 -1.11 -0.77 -0.78 -0.58 -0.97 -0.68 -0.08 -0.42 0.76 1.27 -1.28 -0.33 -2.28 -1.55 -4.92 0.13 0.21 -1.53 0.49 0.41 -0.44 -0.51 -0.54 -0.66 -0.02 0.45 1.11 0.17 0.44 -0.37 1.17 1.3 0.95
0.34 -0.34 0.31 -0.75 0.6 0.82 -0.8 -0.13 0.7 0.71 -0.76 -1.2 -1.6 -1.76 -0.43 -1.2 -1.59 0.21 0.15 -1.43 1.31 -0.7 1.2 -0.17 0.45 -0.05 -0.21 -0.69 0.78 0.36 -0.04 0.62 -0.87 -0.73 -0.89
-0.13 -0.92 -0.34 -1.05 -0.95 -0.22 -1.62 -1.33 0.04 0.13 0.92 1.19 -0.06 0.59 -0.88 -0.9 -3.38 0.15 -0.64 0.05 0.54 -0.07 1.53 0.21 0.8 -0.12 -1.0 -2.13 0.45 -0.94 -0.33 -1.16 1.26 0.18 -0.05
-0.01 -0.47 0.51 0.31 2.51 0.14 -0.9 1.3 -2.14 -0.46 -0.33 -0.3 - - - - - -5.02 -4.37 -0.95 0.13 -2.38 2.1 - - -2.64 - 3.36 - 0.0 - - -0.57 - -
-1.06 -0.86 -0.93 -0.58 0.96 -0.37 -0.44 -1.41 0.44 -0.18 -1.0 -1.02 0.13 -0.54 -0.96 -0.88 -2.23 -0.58 -0.56 -0.39 1.4 -0.59 2.51 -0.11 1.59 -0.83 -1.15 -1.13 0.27 -0.58 -0.86 -0.44 -0.98 -0.13 0.66
0.79 -0.06 -0.46 -1.41 0.26 -0.51 -1.63 0.46 -0.23 -0.49 0.18 -0.03 0.42 -3.72 0.04 -0.08 -0.55 -0.27 -0.56 -0.3 -1.66 -0.56 -1.25 -1.84 -0.57 -0.7 -0.19 2.54 0.07 -0.32 -0.08 -0.87 -0.05 0.81 0.86
0.48 -0.08 0.37 -0.37 -0.37 -0.23 -0.66 -1.24 0.57 0.11 -1.52 -1.31 -0.16 -4.1 -0.17 0.27 -1.06 -0.7 -0.07 -1.57 -1.9 -0.84 -1.56 -1.49 -0.63 1.53 1.24 2.98 -0.25 -1.35 -0.66 -1.97 -1.56 0.29 -2.53
0.29 -0.3 -0.02 -0.45 -2.43 1.22 -0.81 -1.13 2.23 1.47 -0.5 -0.97 -0.07 -3.27 -1.6 0.13 -0.74 -0.38 -1.6 1.23 -1.22 -3.39 -1.21 -1.35 -0.51 0.44 0.04 1.2 1.72 -2.96 -1.44 -4.68 -1.22 0.24 -1.53
-0.43 -0.16 -1.01 -0.1 -0.01 -0.52 0.09 -1.1 0.13 0.09 -2.83 -2.78 0.87 -4.93 -1.22 -0.73 -1.57 0.52 0.29 1.39 1.86 1.16 1.82 -1.13 -1.02 -0.75 -2.09 0.71 0.32 -0.3 -1.76 0.93 -2.74 -2.13 -1.68
-0.27 0.12 -0.27 0.26 -0.2 -0.52 0.13 -0.75 0.26 0.16 -0.7 -0.77 0.95 0.09 -2.12 -0.96 -3.02 -0.28 -0.86 0.9 1.01 0.11 1.24 -0.49 -0.81 0.43 -0.67 0.44 1.09 -0.63 -1.38 0.14 -0.71 -0.14 0.43
-0.8 -0.41 -0.78 -0.21 0.03 -0.91 0.03 -1.4 0.21 -0.12 -1.38 -1.61 0.94 -1.22 -1.9 -0.63 -2.11 0.31 0.36 0.95 1.68 0.09 1.66 -0.96 -1.14 0.72 -0.46 0.28 1.24 -0.84 -1.66 0.28 -1.37 -0.52 0.0
0.02 0.51 0.26 0.68 0.43 -0.04 0.36 -0.16 0.24 0.2 -1.08 -1.32 1.76 -0.92 -0.93 0.23 -1.51 0.86 1.11 -2.67 -2.52 -3.36 -3.35 -4.18 -5.62 1.34 0.57 1.07 1.64 -4.42 -4.81 -3.87 -1.12 -0.16 -0.31
-1.06 -0.33 -1.27 -0.71 0.62 -0.97 -1.29 -1.42 -1.55 -1.0 0.55 -0.18 0.23 -1.63 -2.32 -2.05 -1.4 -1.91 -2.68 1.15 1.24 0.57 3.47 -0.36 0.27 -0.08 -0.37 -1.6 -0.08 -2.33 -2.08 -1.55 -0.3 -3.07 -2.98
-1.28 -1.5 -1.04 -0.92 0.58 -1.07 -1.27 -1.6 0.14 -0.19 -0.58 -1.0 -1.12 -0.59 -0.21 0.19 -2.15 -0.33 -0.84 -0.09 -0.92 -0.91 0.24 -0.42 1.32 0.31 -0.51 2.56 0.87 -0.32 0.37 -0.48 -0.54 -1.0 1.36
-1.71 -1.27 -2.08 -1.62 1.63 -1.21 -1.94 -1.93 -1.28 -1.18 0.16 0.73 -5.69 0.05 -1.55 -1.78 -4.4 -0.39 -0.92 -0.57 1.47 1.57 3.26 -1.29 -0.27 -2.74 -3.54 0.4 -0.73 -1.55 -0.74 -2.45 1.04 -3.03 -1.83
-4.53 -4.96 -4.09 -4.1 -0.06 -2.46 -5.08 -3.71 -1.27 -2.1 1.38 0.27 -0.06 -1.29 -0.37 -1.43 -0.34 -2.38 -2.16 0.98 1.67 -0.69 3.13 -0.64 1.6 -1.64 -2.51 0.7 0.95 -2.11 -1.32 -2.99 -0.77 -0.67 0.21
1.08 0.31 0.48 0.72 0.11 0.4 0.62 0.53 0.79 0.7 -3.11 -3.63 - -6.2 - - - -6.97 - -4.8 -1.05 -2.0 -2.66 - -5.28 - - 4.21 - -3.79 -4.12 - -3.69 -5.88 -5.63
-1.66 -1.39 -1.3 -1.07 -1.91 -0.21 -1.11 -1.74 1.23 0.62 -3.27 -3.42 -0.93 -2.81 -1.01 0.48 -0.74 -1.81 -1.5 0.37 -0.03 -0.22 2.64 0.35 1.29 0.08 -0.62 2.24 1.38 -2.04 -1.16 -3.2 -3.11 -2.39 -1.13
-0.91 -0.64 -0.68 -0.42 -0.76 0.62 -0.79 -1.91 1.72 0.99 -2.63 -2.62 -0.51 -3.12 -0.89 0.23 -1.76 -2.01 -1.89 0.66 0.01 -1.55 0.64 -1.78 -0.15 -2.29 -3.15 3.27 0.15 -3.22 -2.25 -4.5 -2.18 -0.06 1.18
-3.37 -2.6 -3.06 -2.4 0.33 -2.49 -2.3 -2.56 -1.12 -1.94 0.27 0.09 -1.51 0.33 -4.03 -2.79 -6.08 -2.31 -2.41 -0.03 0.92 -1.29 3.93 -2.59 1.76 -1.99 -0.83 0.22 -0.25 -2.77 -3.04 -2.41 -0.17 -1.22 -0.52
-1.17 -0.66 -1.4 -0.76 0.61 -0.29 -0.34 -1.09 0.22 -0.07 -6.39 -5.87 -0.79 -8.19 -0.8 -0.9 -0.9 -0.48 -0.84 -0.25 2.07 0.91 2.64 0.07 2.15 -2.42 -2.29 0.28 1.1 -1.3 -1.54 -0.95 -7.54 -8.07 -
-0.98 -0.94 -0.73 -0.43 -0.11 -1.07 -1.39 1.85 -1.22 -0.97 2.08 1.63 -1.79 -1.59 -2.09 -1.45 -3.89 -1.6 -1.33 -0.5 1.04 1.65 -0.83 -0.82 -2.02 -2.29 -1.94 1.06 0.15 -0.8 -0.08 -1.06 0.84 -0.04 0.36
-0.45 -0.39 -0.17 -0.08 -0.08 -0.07 0.39 -1.08 1.04 0.55 -9.0 - 2.04 -8.24 -0.66 -0.53 -1.76 0.29 0.17 0.41 0.88 0.2 0.97 0.06 -0.36 0.04 -0.55 -0.1 1.04 0.09 -1.01 1.03 - - -7.9
-4.08 -3.83 -3.66 -3.07 0.08 -1.74 -2.58 -2.85 -0.5 -1.1 0.6 0.28 0.04 -0.76 -2.84 -1.67 -3.59 -2.85 -3.11 0.7 0.92 -0.28 3.04 -0.41 1.5 -1.8 -1.31 0.43 0.69 -0.94 -0.84 -1.37 0.09 -1.02 1.95
1.03 -1.42 0.46 -1.12 1.4 0.3 -2.51 -0.13 2.08 -0.02 -3.93 -2.71 1.53 - - - - -9.3 - -3.01 -0.01 -2.17 0.89 - - -4.37 -3.07 3.75 -5.59 - - - -3.53 -2.22 -1.71

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.